Browse Element(s) Details


Os.4801.1.S1_x_at

Description gb:C23627
DB_XREF= gi:1944305
DB_XREF=C23627
CLONE=S1870_1Z
TID=Os.4801.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.4801 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g520103/11Allinase, C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g51960OsAffx.11569.1.S1_at11/111+30195755..30196102hypothetical protein
LOC_Os01g51970OsAffx.23757.1.S1_at8/111+30198011..30200500hypothetical protein
LOC_Os01g51980Os.14115.1.S1_at11/111+30201333..30204331Allinase, C-terminal domain containing protein, expressed
LOC_Os01g51990OsAffx.2307.1.S1_at8/111+30205282..30207127AN1-like Zinc finger family protein
LOC_Os01g52000OsAffx.915.1.S1_at11/111+30208648..30212949retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g52010Os.27958.1.S1_at11/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52010Os.5347.1.S1_x_at10/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52010Os.4801.1.S1_x_at3/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52010OsAffx.914.1.S1_x_at2/111+30220876..30225299Allinase, C-terminal domain containing protein, expressed
LOC_Os01g52020NANA1+30227153..30229009hypothetical protein
LOC_Os01g52030Os.28489.1.S1_at8/111+30230953..30231637AN1-like Zinc finger family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016846molecular_functioncarbon-sulfur lyase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4801.1.S1_x_at--623--2591NONE
AACGATCAGCCCTACTATCTGATTG
NONE
Os.4801.1.S1_x_at--983--1871NONE
ACGATCAGCCCTACTATCTGATTGT
NONE
Os.4801.1.S1_x_at--375--4051NONE
CGATCAGCCCTACTATCTGATTGTT
NONE
Os.4801.1.S1_x_at--90--6451NONE
GATCAGCCCTACTATCTGATTGTTC
NONE
Os.4801.1.S1_x_at--942--391NONE
ATCAGCCCTACTATCTGATTGTTCT
NONE
Os.4801.1.S1_x_at--516--9671NONE
TCAGCCCTACTATCTGATTGTTCTT
NONE
Os.4801.1.S1_x_at--379--1671NONE
AGCCCTACTATCTGATTGTTCTTGG
NONE
Os.4801.1.S1_x_at--913--4531NONE
GCCCTACTATCTGATTGTTCTTGGG
NONE
Os.4801.1.S1_x_at--106--4311Chr01:30225064..30225087 (24 bp)
CCTACTATCTGATTGTTCTTGGGTA
LOC_Os01g52010
Os.4801.1.S1_x_at--635--9891Chr01:30225065..30225089 (25 bp)
TACTATCTGATTGTTCTTGGGTAAG
LOC_Os01g52010
Os.4801.1.S1_x_at--338--3671Chr01:30225067..30225091 (25 bp)
CTATCTGATTGTTCTTGGGTAAGTT
LOC_Os01g52010
Target Sequence 
AACGATCAGCCCTACTATCTGATTGTTCTTGGGTAAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4801.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis