Browse Element(s) Details


Os.48032.1.S1_at

Description gb:AB118063
DB_XREF= gi:44680068
DB_XREF=AB118063
CLONE=17F06-41A07
TID=Os.48032.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.48032 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative leucine rich repeat containing protein kinase (OJ1004_F02.15), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g1397011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g13930OsAffx.31892.1.S1_x_at11/1110+7334816..7336547hypothetical protein
LOC_Os10g13930OsAffx.31892.5.S1_x_at3/1110+7334816..7336547hypothetical protein
LOC_Os10g13930OsAffx.31892.5.S1_at3/1110+7334816..7336547hypothetical protein
LOC_Os10g13940Os.46062.1.S1_at11/1110+7339186..7345035MATE efflux family protein, putative, expressed
LOC_Os10g13950OsAffx.30032.1.S1_at11/1110+7345723..7347994hypothetical protein
LOC_Os10g13950OsAffx.16416.1.S1_x_at1/1110+7345723..7347994hypothetical protein
LOC_Os10g13960OsAffx.20598.1.S1_at11/1110+7349743..7354208retrotransposon protein, putative, unclassified, expressed
LOC_Os10g13970Os.48032.1.S1_at11/1110+7357220..7360763Leucine Rich Repeat family protein, expressed
LOC_Os10g13970OsAffx.31524.1.S1_x_at1/1110+7357220..7360763Leucine Rich Repeat family protein, expressed
LOC_Os10g13970OsAffx.19417.2.S1_x_at1/1110+7357220..7360763Leucine Rich Repeat family protein, expressed
LOC_Os10g13980NANA10+7366103..7372198retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g13990NANA10+7372514..7375455retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g14004OsAffx.8351.1.S1_at11/1110+7378135..7378344NA

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0007172biological_processsignal complex formation
GO:0009934biological_processregulation of meristem organization
GO:0030154biological_processcell differentiation
GO:0016020cellular_componentmembrane
GO:0016021cellular_componentintegral to membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004702molecular_functionreceptor signaling protein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48032.1.S1_at--635--1591Chr10:7360072..7360096 (25 bp)
AGCTCCATGATCTCGGCAAGCATGC
LOC_Os10g13970
Os.48032.1.S1_at--940--7671Chr10:7360346..7360370 (25 bp)
GGGTTAGCCAGGCATTTCCTGCAGA
LOC_Os10g13970
Os.48032.1.S1_at--546--9231Chr10:7360376..7360400 (25 bp)
TCCATGTTGTGGACAGCCAGCTTTT
LOC_Os10g13970
Os.48032.1.S1_at--1056--3391Chr10:7360393..7360417 (25 bp)
CAGCTTTTGCACGATGGCTCATCTT
LOC_Os10g13970
Os.48032.1.S1_at--637--431Chr10:7360413..7360437 (25 bp)
ATCTTCTACTACTAACCTGCATCTG
LOC_Os10g13970
Os.48032.1.S1_at--562--851Chr10:7360439..7360463 (25 bp)
ATGGCTTCCTTGTGCACGTTTTCGA
LOC_Os10g13970
Os.48032.1.S1_at--474--1531Chr10:7360589..7360613 (25 bp)
AGCAGTGATCTATTGCCCTTGTCTC
LOC_Os10g13970
Os.48032.1.S1_at--1087--4311Chr10:7360605..7360629 (25 bp)
CCTTGTCTCCTCACAGTAGAATGGG
LOC_Os10g13970
Os.48032.1.S1_at--646--1171Chr10:7360619..7360643 (25 bp)
AGTAGAATGGGTTTTCGCTTCCGCA
LOC_Os10g13970
Os.48032.1.S1_at--205--1611Chr10:7360669..7360693 (25 bp)
AGCTGCATCTGCATGCCTGTTGATT
LOC_Os10g13970
Os.48032.1.S1_at--184--6651Chr10:7360687..7360711 (25 bp)
GTTGATTACCCTTTGCTTCTATATT
LOC_Os10g13970
Target Sequence 
AGCTCCATGATCTCGGCAAGCATGCCAGGTACAGTTGGGTACATTGCACCAGAGTATGGAGCTCTTGGAAAAGCATCACG
GNAAGAGCGATGTTTTCAGCTATGGAATCNTGCTGCTTGAAGTGTTCACTGGAAAGAGACCAACAGATGCNATGTTTGTG
GGAGAACTGAACANCAGGCTGTGGGTTAGCCAGGCATTTCCTGCAGAGCTCGTCCATGTTGTGGACAGCCAGCTTTTGCA
CGATGGCTCATCTTCTACTACTAACCTGCATCTGCATGGCTTCCTTGTGCACGTTTTCGAGCTGGGTTTGCACTGCTCAG
CTGACTACCCAGAGCAAAGGATGGCGATGCGTGATGTGGTTGTGACACTGAAGACGATCAGGAAGGACTATGTCAACTGG
ATGGTATTAATGGGGAGCACTGCCCAGCAGTGATCTATTGCCCTTGTCTCCTCACAGTAGAATGGGTTTTCGCTTCCGCA
TTAAGAATAACACAACAATAGCGTCAGCTGCATCTGCATGCCTGTTGATTACCCTTTGCTTCTATATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48032.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis