Browse Element(s) Details


Os.48055.1.S1_at

Description gb:AK073293.1
DB_XREF= gi:32983316
TID=Os.48055.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.48055 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033024B21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033024B21, full insert sequence.
FL= gb:AK073293.1 gb:AK120235.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g0845011/11Eukaryotic translation initiation factor 3 subunit 11 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g08420OsAffx.18485.5.S1_at10/113+4298894..4301620hypothetical protein
LOC_Os03g08430Os.47816.1.A1_at11/113+4306856..4315342SacI homology domain containing protein, expressed
LOC_Os03g08430Os.28416.1.S1_at10/113+4306856..4315342SacI homology domain containing protein, expressed
LOC_Os03g08440Os.10138.2.S1_a_at11/113+4315859..431806540S ribosomal protein SA, putative, expressed
LOC_Os03g08450Os.48055.1.S1_at11/113+4318567..4321853Eukaryotic translation initiation factor 3 subunit 11 family protein, expressed
LOC_Os03g08460Os.11120.1.S1_at11/113+4322842..4324818AP2 domain containing protein, expressed
LOC_Os03g08470Os.6009.3.S1_a_at11/113+4327853..4329648AP2 domain containing protein, expressed
LOC_Os03g08480Os.10398.1.S1_at11/113+4336420..4339667SAP-like protein BP-73, putative, expressed
LOC_Os03g08480Os.10398.1.S2_at3/113+4336420..4339667SAP-like protein BP-73, putative, expressed
LOC_Os03g08490Os.23028.1.S1_s_at11/113+4346390..4347501AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005852cellular_componenteukaryotic translation initiation factor 3 complex
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48055.1.S1_at--619--571Chr03:4319329..4319353 (25 bp)
ATCCTATGCGATACATGTGCTCTCC
LOC_Os03g08450
Os.48055.1.S1_at--703--1411Chr03:4319294..4319318 (25 bp)
AGAAAGTTCCTAGGCCTGTTCTTGC
LOC_Os03g08450
Os.48055.1.S1_at--214--7711Chr03:4318931..4318955 (25 bp)
GGGTGCACGATCTCAGCTGATTGTC
LOC_Os03g08450
Os.48055.1.S1_at--803--1211Chr03:4318893..4318917 (25 bp)
AGTTCAATCACCCTGAGCTCAAGAA
LOC_Os03g08450
Os.48055.1.S1_at--200--5551Chr03:4318858..4318882 (25 bp)
GAAACTGTTCCGTTCGAGCATGTAA
LOC_Os03g08450
Os.48055.1.S1_at--677--5911Chr03:4318843..4318867 (25 bp)
GAGCATGTAACTCGCATATTCCCTG
LOC_Os03g08450
Os.48055.1.S1_at--871--10211Chr03:4318827..4318851 (25 bp)
TATTCCCTGTCCTTAGCTGAGTCAA
LOC_Os03g08450
Os.48055.1.S1_at--1016--8991Chr03:4318757..4318781 (25 bp)
TGAAGATACTCTGGGCGCATCTGTT
LOC_Os03g08450
Os.48055.1.S1_at--93--491Chr03:4318739..4318763 (25 bp)
ATCTGTTTTCTCTGCTGTGATGTAC
LOC_Os03g08450
Os.48055.1.S1_at--455--4231Chr03:4318664..4318688 (25 bp)
CCGAGCGTCATATCTGCCTAGTTAT
LOC_Os03g08450
Os.48055.1.S1_at--561--2251Chr03:4318576..4318600 (25 bp)
AAATTTTGCATAGCGGCCGTGTTCG
LOC_Os03g08450
Target Sequence 
ATCCTATGCGATACATGTGCTCTCCTTGANCATACCAGAAAGTTCCTAGGCCTGTTCTTGCGGAGGCCATCAACATTGAG
GGTCTTGCATTGGACAAGTTCCTGGAGCACCATATTGCAAACTCCGGTTGGGTGATCGAGAAGGGTGCACGATCTCAGCT
GATTGTCCTTCCACGCAACGAGTTCAATCACCCTGAGCTCAAGAAGAACACAGCTGAAACTGTTCCGTTCGAGCATGTAA
CTCGCATATTCCCTGTCCTTAGCTGAGTCAACAACCAGACCAACTGAGATTTTGCATTACAGAACTTCTGAGCGCGTGAA
GATACTCTGGGCGCATCTGTTTTCTCTGCTGTGATGTACTGCGTTTTGATATGCCTGTTTTAGCTAAACAAGTCAATTCT
AGTGACGATCCGAGCGTCATATCTGCCTAGTTATGTTTATGTAAGCATTCTGCCATGATATTACATTGTTGGCAAGATAT
TTTATCAGGTCAGAGCAAAATTTTGCATAGCGGCCGTGTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48055.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis