Browse Element(s) Details


Os.48140.1.A1_at

Description gb:NM_194731.1
DB_XREF= gi:37530821
TID=Os.48140.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.48140 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) unknown protein (OSJNBb0004A06.3), mRNA.
PROD=unknown protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0417010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g04130Os.54237.1.S1_at11/1110+1897478..1899973expressed protein
LOC_Os10g04140Os.26886.2.S1_s_at11/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140Os.26886.4.S1_at10/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140Os.26886.6.S1_s_at9/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140OsAffx.16467.1.S1_at7/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140Os.51634.1.S1_at2/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04140OsAffx.3425.1.S1_at1/1110+1904630..1912082transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04150Os.26886.3.S1_x_at11/1110+1914019..1915194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g04160OsAffx.18120.1.S1_at11/1110+1916845..1918030expressed protein
LOC_Os10g04170Os.48140.1.A1_at10/1110+1922659..1929564hypothetical protein
LOC_Os10g04180Os.18720.1.S1_at10/1110+1933447..1936961NB-ARC domain containing protein, expressed
LOC_Os10g04190Os.46733.1.S1_at11/1110+1938793..1939827disease resistance protein RPM1 homolog, putative, expressed
LOC_Os10g04210OsAffx.18121.1.S1_at11/1110+1945918..1948038hypothetical protein
LOC_Os10g04220OsAffx.20354.1.S1_at1/1110+1952461..1954923retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48140.1.A1_at--130--6452Chr10:1927746..1927770 (25 bp)
GATAATTAAAACACCATTCCACATT
LOC_Os10g04170
Os.48140.1.A1_at--398--3373Chr10:1927757..1927781 (25 bp)
CACCATTCCACATTTGCAAGACATC
LOC_Os10g04170
Os.48140.1.A1_at--875--9213Chr10:1927763..1927787 (25 bp)
TCCACATTTGCAAGACATCTGTCCA
LOC_Os10g04170
Os.48140.1.A1_at--674--1413Chr10:1927775..1927799 (25 bp)
AGACATCTGTCCAACCTTTCCAAAA
LOC_Os10g04170
Os.48140.1.A1_at--1010--8653Chr10:1927782..1927806 (25 bp)
TGTCCAACCTTTCCAAAACCAGATC
LOC_Os10g04170
Os.48140.1.A1_at--616--2433Chr10:1927796..1927820 (25 bp)
AAAACCAGATCCTTACCCTGTTGCT
LOC_Os10g04170
Os.48140.1.A1_at--756--713Chr10:1927802..1927826 (25 bp)
AGATCCTTACCCTGTTGCTTATTGG
LOC_Os10g04170
Os.48140.1.A1_at--977--3653Chr10:1927807..1927831 (25 bp)
CTTACCCTGTTGCTTATTGGACCAA
LOC_Os10g04170
Os.48140.1.A1_at--44--9973Chr10:1927809..1927833 (25 bp)
TACCCTGTTGCTTATTGGACCAAGT
LOC_Os10g04170
Os.48140.1.A1_at--80--4173Chr10:1927811..1927834 (24 bp)
CCCTGTTGCTTATTGGACCAAGTGG
LOC_Os10g04170
Os.48140.1.A1_at--989--5851NONE
GACCAAGTGGTCCATCAGAGGCATT
NONE
Target Sequence 
GATAATTAAAACACCATTCCACATTTGCAAGACATCTGTCCAACCTTTCCAAAACCAGATCCTTACCCTGTTGCTTATTG
GACCAAGTGGTCCATCAGAGGCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48140.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis