Browse Element(s) Details


Os.4831.1.S1_a_at

Description gb:AF145053.1
DB_XREF= gi:6525064
GEN=tufA
TID=Os.4831.1
CNT=68
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.4831 (NCBI UniGene Cluster)
DEF=Oryza sativa chloroplast translational elongation factor Tu (tufA) mRNA, complete cds; nuclear gene for chloroplast product.
PROD=chloroplast translational elongation factor Tu
FL= gb:AF145053.1 gb:AK104785.1 gb:AK119587.1 gb:AK064937.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3821011/11Elongation factor Tu, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38170OsAffx.12393.1.S1_x_at11/112+23092177..23092802expressed protein
LOC_Os02g38180OsAffx.24627.1.S1_at10/112+23092959..23096875expressed protein
LOC_Os02g38190Os.9024.1.S1_at11/112+23099821..23100668expressed protein
LOC_Os02g38200Os.22514.1.S1_at11/112+23101138..23104476Isocitrate dehydrogenase subunit 1, mitochondrial precursor, putative, expressed
LOC_Os02g38210Os.4831.1.S1_a_at11/112+23106068..23108027Elongation factor Tu, chloroplast precursor, putative, expressed
LOC_Os02g38220OsAffx.24628.1.S1_at11/112+23110383..23114600eukaryotic translation initiation factor 4B, putative, expressed
LOC_Os02g38230OsAffx.24629.1.S1_at11/112+23115502..23117230NAR2.2, putative, expressed
LOC_Os02g38240Os.19872.1.S1_at10/112+23121042..23124033rhodanese family protein, putative, expressed
LOC_Os02g38250Os.6276.1.S1_at11/112+23126195..23134470expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003746molecular_functiontranslation elongation factor activity
GO:0005516molecular_functioncalmodulin binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4831.1.S1_a_at--469--391Chr02:23107269..23107293 (25 bp)
ATCACGCCACACACCAAGTTTGATG
LOC_Os02g38210
Os.4831.1.S1_a_at--22--3311Chr02:23107276..23107300 (25 bp)
CACACACCAAGTTTGATGCGGTTGT
LOC_Os02g38210
Os.4831.1.S1_a_at--414--6351Chr02:23107290..23107314 (25 bp)
GATGCGGTTGTGTATGTCCTGAAGA
LOC_Os02g38210
Os.4831.1.S1_a_at--941--8491Chr02:23107325..23107349 (25 bp)
TGGACGGCACTCACCGTTTTTCCCT
LOC_Os02g38210
Os.4831.1.S1_a_at--523--9651Chr02:23107361..23107385 (25 bp)
TCAGTTCTACATGCGGACTACCGAT
LOC_Os02g38210
Os.4831.1.S1_a_at--512--9871Chr02:23107368..23107392 (25 bp)
TACATGCGGACTACCGATGTGACGG
LOC_Os02g38210
Os.4831.1.S1_a_at--1008--5351Chr02:23107433..23107457 (25 bp)
GAAGATGTGCATGCCTGGTGACCGT
LOC_Os02g38210
Os.4831.1.S1_a_at--671--4471Chr02:23107445..23107469 (25 bp)
GCCTGGTGACCGTGTCAAGATGGTT
LOC_Os02g38210
Os.4831.1.S1_a_at--326--1671Chr02:23107483..23107507 (25 bp)
AGCCCGTCGCTTGTGAGCAGGGAAT
LOC_Os02g38210
Os.4831.1.S1_a_at--208--6251Chr02:23107579..23107603 (25 bp)
GATGGAGCATATCCACCGTGAGAAT
LOC_Os02g38210
Os.4831.1.S1_a_at--295--4811Chr02:23107629..23107653 (25 bp)
GCTCTGTAGTTGTTATTACGCGTTG
LOC_Os02g38210
Target Sequence 
ATCACGCCACACACCAAGTTTGATGCGGTTGTGTATGTCCTGAAGAAGGACGAGGGTGGACGGCACTCACCGTTTTTCCC
TGGTTACCGCCCTCAGTTCTACATGCGGACTACCGATGTGACGGGGAATGTCCACAAAGATTATGAACGACAAGGACGAG
GAGGCGAAGATGTGCATGCCTGGTGACCGTGTCAAGATGGTTGTGGAGCTCATCCAGCCCGTCGCTTGTGAGCAGGGAAT
GAGGTTTGCCATCCCGTGAGGGTGGAAAGACCGTCGGTGCCGGCGTCATCAATACGATCTTGAAGTAAACTGGATGGAGC
ATATCCACCGTGAGAATTTTCCTTGTTTACTCTTTGCGAAATGCTCTGTAGTTGTTATTACGCGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4831.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis