Browse Element(s) Details


Os.48312.1.S1_at

Description gb:AK071792.1
DB_XREF= gi:32981815
TID=Os.48312.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48312 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023112F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023112F10, full insert sequence.
FL= gb:AK071792.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5742011/11Reticulon family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57350Os.18279.1.S1_at11/114+33919168..33923078EH-domain containing protein 1, putative, expressed
LOC_Os04g57360Os.54317.1.S1_at11/114+33923478..33926185expressed protein
LOC_Os04g57360OsAffx.26645.1.S1_at10/114+33923478..33926185expressed protein
LOC_Os04g57370Os.22450.1.S1_at11/114+33929122..33931657Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57380Os.57028.1.S1_at11/114+33931853..33933371Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57390OsAffx.14457.1.S1_at11/114+33934285..33935850Phospholipase/Carboxylesterase family protein, expressed
LOC_Os04g57400Os.5851.1.S1_at11/114+33936430..339396275-methylthioribose kinase family protein, expressed
LOC_Os04g57410Os.5851.1.S1_at4/114+33942669..339453015-methylthioribose kinase family protein
LOC_Os04g57420Os.48312.1.S1_at11/114+33947430..33950345Reticulon family protein, expressed
LOC_Os04g57420Os.56185.1.S1_at1/114+33947430..33950345Reticulon family protein, expressed
LOC_Os04g57420Os.56185.1.S1_x_at1/114+33947430..33950345Reticulon family protein, expressed
LOC_Os04g57430Os.15377.1.A1_at7/114+33952558..33954118Leucine Rich Repeat family protein, expressed
LOC_Os04g57440Os.8032.1.S1_at11/114+33954276..33957672Cysteine protease 1 precursor, putative, expressed
LOC_Os04g57440Os.8032.1.S2_at11/114+33954276..33957672Cysteine protease 1 precursor, putative, expressed
LOC_Os04g57450NANA4+33959729..33963324retrotransposon protein, putative, unclassified
LOC_Os04g57460NANA4+33963645..33969798retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005783cellular_componentendoplasmic reticulum
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48312.1.S1_at--983--3211Chr04:33948914..33948938 (25 bp)
CAAGGTGTTGGCTGTTGGCCATGAT
LOC_Os04g57420
Os.48312.1.S1_at--691--8511Chr04:33949127..33949151 (25 bp)
TGGAATGCTCTTCAACTTCCTTACG
LOC_Os04g57420
Os.48312.1.S1_at--288--2051Chr04:33949141..33949165 (25 bp)
ACTTCCTTACGCTCATTTACATTGG
LOC_Os04g57420
Os.48312.1.S1_at--551--10311Chr04:33949289..33949313 (25 bp)
TTTCTCTGTTAGTTCCACCATTGTA
LOC_Os04g57420
Os.48312.1.S1_at--995--5311Chr04:33949317..33949341 (25 bp)
GAAGTACCAGGACCAAGTCGATGAA
LOC_Os04g57420
Os.48312.1.S1_at--823--7851Chr04:33949348..33949372 (25 bp)
GGTATGGCGCACAGTGTACTATCAA
LOC_Os04g57420
Os.48312.1.S1_at--784--2931Chr04:33949371..33949395 (25 bp)
AAGGCACTTAGATACCATCATTAGC
LOC_Os04g57420
Os.48312.1.S1_at--225--6951Chr04:33950167..33950191 (25 bp)
GTAGTTTACATGCACTCTGTTCAAT
LOC_Os04g57420
Os.48312.1.S1_at--405--4751Chr04:33950239..33950263 (25 bp)
GCTGAGGTTTATCATGGGCACATAT
LOC_Os04g57420
Os.48312.1.S1_at--746--9591Chr04:33950298..33950322 (25 bp)
TCATTTTCTGTAGCCGGCATATACA
LOC_Os04g57420
Os.48312.1.S1_at--1128--3291Chr04:33950321..33950344 (24 bp)
CAAATATGTTGGTTGCTGGTGCACC
LOC_Os04g57420
Target Sequence 
CAAGGTGTTGGCTGTTGGCCATGATATTGCCATCAAGAGAGATAGGAGTGTTTTTATAAAGGTTATATTGATTTTATGGG
TGGTTTCATACATTGGAATGCTCTTCAACTTCCTTACGCTCATTTACATTGGTGTAATGTTTTCTCTGTTAGTTCCACCA
TTGTATGAGAAGTACCAGGACCAAGTCGATGAAAAGATTGGTATGGCGCACAGTGTACTATCAAGGCACTTAGATACCAT
CATTAGCAAGACTGGAGAATCAACCAAGCAAAAGAAGACTGAGTAACCGGTGTTNNNGCTACATTGGGAACCTCTTTTGT
CNTATGTGGNTGGNCATGAANCTCGTCAGNTACTCTCCATACCTGTGAACCACCACTGGNAANNTTCTTGGATATCGAAG
ATGTCATGTTTGACTGCTGATGTAGTTTACATGCACTCTGTTCAATTTGAGAAATGGAATGCTTTGTATATTTTTTCAAG
TAACATGACACATGCTGAGGTTTATCATGGGCACATATCTTGTGGATAATGATATATACTTTTCCCCTGAAATCATTTTC
TGTAGCCGGCATATACAAATATGTTGGTTGCTGGTGCACC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48312.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis