Browse Element(s) Details


Os.48418.1.S1_at

Description gb:AK111439.1
DB_XREF= gi:32996648
TID=Os.48418.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48418 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-A05, full insert sequence.
FL= gb:AK111439.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2438911/11Serine carboxypeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24340OsAffx.18987.1.S1_at11/1111+13364180..13368847Serine carboxypeptidase family protein, expressed
LOC_Os11g24350OsAffx.7149.1.S1_at1/1111+13371643..13379209retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g24360NANA11+13389808..13390206hypothetical protein
LOC_Os11g24389Os.48418.1.S1_at11/1111+13390545..13415272Serine carboxypeptidase family protein, expressed
LOC_Os11g24389OsAffx.29148.1.S1_at2/1111+13390545..13415272Serine carboxypeptidase family protein, expressed
LOC_Os11g24389Os.51416.1.S1_at1/1111+13390545..13415272Serine carboxypeptidase family protein, expressed
LOC_Os11g24420NANA11+13417006..13417547hypothetical protein
LOC_Os11g24430OsAffx.7189.1.S1_at10/1111+13423830..13424303hypothetical protein
LOC_Os11g24440OsAffx.7190.1.S1_at11/1111+13431797..13432282hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0019748biological_processsecondary metabolism
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0016752molecular_functionsinapoyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48418.1.S1_at--274--5931Chr11:13395037..13395061 (25 bp)
GGAGGACTAAAACATCCACCTCCTC
LOC_Os11g24389
Os.48418.1.S1_at--969--2291Chr11:13394912..13395025 (25 bp)
AAATGTGGTGTCTATGCCAACTATT
LOC_Os11g24389
Os.48418.1.S1_at--759--3691Chr11:13394752..13394870 (25 bp)
CTAGGAATCAAGAAGGGCACCATAA
LOC_Os11g24389
Os.48418.1.S1_at--251--2971Chr11:13394724..13394748 (25 bp)
AATGGGTTAGGTGCCACGAACATGA
LOC_Os11g24389
Os.48418.1.S1_at--428--9971Chr11:13394697..13394721 (25 bp)
TACCATACAACATCGACATCAGGAG
LOC_Os11g24389
Os.48418.1.S1_at--351--8931Chr11:13393539..13393563 (25 bp)
TGACCACGATGCTGTTGTGCCATTC
LOC_Os11g24389
Os.48418.1.S1_at--802--71Chr11:13393518..13393542 (25 bp)
ATTCCTCGGGACACAAGCCTGGGTG
LOC_Os11g24389
Os.48418.1.S1_at--448--3431Chr11:13393275..13393463 (25 bp)
CAGTCTGCTGGATTCACCATAGCAT
LOC_Os11g24389
Os.48418.1.S1_at--877--2171Chr11:13390697..13390721 (25 bp)
ACACTGCACCAGAGTTTGAGCCGGA
LOC_Os11g24389
Os.48418.1.S1_at--445--2991Chr11:13390660..13390684 (25 bp)
AATGTTTAAGCGTTGGATTTCCAGC
LOC_Os11g24389
Os.48418.1.S1_at--1089--7931Chr11:13390646..13390670 (25 bp)
GGATTTCCAGCATACCACTATGATG
LOC_Os11g24389
Target Sequence 
GGAGGACTAAAACATCCACCTCCTCAACCTTCNATAAAATGTGGTGTCTATGCCAACTATTNGTCATATTTTTGGNCAAA
CAACAANTTTACACGAAGAACTCTAGGAATCAAGAAGGGCACCATAAATGAATGGGTTAGGTGCCACGAACATGATNTAC
CATACAACATCGACATCAGGAGCAGCATAAAGTATCNTCGAAATGTTACACTAAAAGNNNNNNNNNNNNNNNNNNNNNNT
GGTGACCACGATGCTGTTGTGCCATTCCTCGGGACACAAGCCTGGGTGAGATCANTCAACTACCCAATTGTGGATGACTG
GAGAGCCTGGCATATCGATGGCCAGTCTGCTGGATTCACCATAGCATATGGAAACAATTTGACATTNGCTACAGTAAAGG
GTGCTGGACACACTGCACCAGAGTTTGAGCCGGANAGGTGCTTTNCAATGTTTAAGCGTTGGATTTCCAGCATACCACTA
TGATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48418.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis