Browse Element(s) Details


Os.51416.1.S1_at

Description gb:AK062744.1
DB_XREF= gi:32972762
TID=Os.51416.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51416 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-F06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-106-F06, full insert sequence.
FL= gb:AK062744.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g243891/11Serine carboxypeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24340OsAffx.18987.1.S1_at11/1111+13364180..13368847Serine carboxypeptidase family protein, expressed
LOC_Os11g24350OsAffx.7149.1.S1_at1/1111+13371643..13379209retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g24360NANA11+13389808..13390206hypothetical protein
LOC_Os11g24389Os.48418.1.S1_at11/1111+13390545..13415272Serine carboxypeptidase family protein, expressed
LOC_Os11g24389OsAffx.29148.1.S1_at2/1111+13390545..13415272Serine carboxypeptidase family protein, expressed
LOC_Os11g24389Os.51416.1.S1_at1/1111+13390545..13415272Serine carboxypeptidase family protein, expressed
LOC_Os11g24420NANA11+13417006..13417547hypothetical protein
LOC_Os11g24430OsAffx.7189.1.S1_at10/1111+13423830..13424303hypothetical protein
LOC_Os11g24440OsAffx.7190.1.S1_at11/1111+13431797..13432282hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0019748biological_processsecondary metabolism
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0016752molecular_functionsinapoyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51416.1.S1_at--685--9851Chr09:5711594..5711618 (25 bp)
TACACTACGGGCATTCCTTTCAGGG
NONE
Os.51416.1.S1_at--876--3791Chr09:5711637..5711661 (25 bp)
CTCCGGCACGTTCAGTTAGTCTAGG
NONE
Os.51416.1.S1_at--992--95735Chr12:15695457..15695481 (25 bp)
TCTTGATCCATGGTTGCTCTCATAT
NONE
Os.51416.1.S1_at--42--77538Chr12:26781887..26781911 (25 bp)
GGTGTGGTCAGGGTAACTTCTCTAC
NONE
Os.51416.1.S1_at--268--20514Chr12:26781902..26781926 (25 bp)
ACTTCTCTACGTCTACAGTCGATTA
NONE
Os.51416.1.S1_at--637--1152Chr09:5711730..5711754 (25 bp)
AGTCGATTACTCCTCTATTCTTTGT
NONE
Os.51416.1.S1_at--1053--3852Chr09:5711788..5711812 (25 bp)
CTGAGGCATCAGCACCATAAGGTTG
NONE
Os.51416.1.S1_at--688--55916Chr12:13035579..13035598 (20 bp)
GAAATACCACATCCCTAAGGCGAAT
NONE
Os.51416.1.S1_at--964--654Chr09:5711852..5711876 (25 bp)
ATGCAAGCTGTATCCACGGCTATTT
NONE
Os.51416.1.S1_at--20--7917Chr09:5711903..5711927 (25 bp)
GGTTGCCTTAGTTTAACTCTGGTCA
NONE
Os.51416.1.S1_at--1139--2233Chr09:5711927..5711951 (25 bp)
AAATTGTGTTGTTGGCTTGCTTTCA
NONE
Target Sequence 
TACACTACGGGCATTCCTTTCAGGGGTAGCATGGTAAATATGCCTCCGGCACGTTCAGTTAGTCTAGGATCTTGATCCAT
GGTTGCTCTCATATCCGATCCCCAGGGTGTGGTCAGGGTAACTTCTCTACGTCTACAGTCGATTACTCCTCTATTCTTTG
TTAACCAATCCATACCCAATATGACATCAAGGGTCTGAGGCATCAGCACCATAAGGTTGGAGGGAAATACCACATCCCTA
AGGCGAATGGGTACGTCAATGCAAGCTGTATCCACGGCTATTTCACCCCCAGGTGAATGTACTAACATTGGTTGCCTTAG
TTTAACTCTGGTCAAATTGTGTTGTTGGCTTGCTTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51416.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis