Browse Element(s) Details


OsAffx.7189.1.S1_at

Description tigr:9639.m02158
TID=OsAffx.7189.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2443010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24389Os.48418.1.S1_at11/1111+13390545..13415272Serine carboxypeptidase family protein, expressed
LOC_Os11g24389OsAffx.29148.1.S1_at2/1111+13390545..13415272Serine carboxypeptidase family protein, expressed
LOC_Os11g24389Os.51416.1.S1_at1/1111+13390545..13415272Serine carboxypeptidase family protein, expressed
LOC_Os11g24420NANA11+13417006..13417547hypothetical protein
LOC_Os11g24430OsAffx.7189.1.S1_at10/1111+13423830..13424303hypothetical protein
LOC_Os11g24440OsAffx.7190.1.S1_at11/1111+13431797..13432282hypothetical protein
LOC_Os11g24450Os.11670.1.S1_at11/1111+13441302..13445242Mitochondrial carrier protein, expressed
LOC_Os11g24450OsAffx.31123.1.S1_x_at11/1111+13441302..13445242Mitochondrial carrier protein, expressed
LOC_Os11g24450Os.37494.1.S1_x_at5/1111+13441302..13445242Mitochondrial carrier protein, expressed
LOC_Os11g24460OsAffx.18990.1.S1_at11/1111+13447366..13450322hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.7189.1.S1_at--720--10451NONE
TTAATCTACCACAGGGTTCGGCTTG
NONE
OsAffx.7189.1.S1_at--131--9751Chr11:13423927..13424224 (25 bp)
TAATCTACCACAGGGTTCGGCTTGT
LOC_Os11g24430
OsAffx.7189.1.S1_at--387--451Chr11:13423929..13424226 (25 bp)
ATCTACCACAGGGTTCGGCTTGTCA
LOC_Os11g24430
OsAffx.7189.1.S1_at--74--9551Chr11:13423930..13424227 (25 bp)
TCTACCACAGGGTTCGGCTTGTCAA
LOC_Os11g24430
OsAffx.7189.1.S1_at--180--3711Chr11:13423931..13424228 (25 bp)
CTACCACAGGGTTCGGCTTGTCAAA
LOC_Os11g24430
OsAffx.7189.1.S1_at--892--9971Chr11:13423932..13424229 (25 bp)
TACCACAGGGTTCGGCTTGTCAAAC
LOC_Os11g24430
OsAffx.7189.1.S1_at--356--3191Chr11:13424211..13424232 (22 bp)
CACAGGGTTCGGCTTGTCAAACCAA
LOC_Os11g24430
OsAffx.7189.1.S1_at--236--6711Chr11:13424214..13424238 (25 bp)
GTTCGGCTTGTCAAACCAAACACGG
LOC_Os11g24430
OsAffx.7189.1.S1_at--1144--9431Chr11:13424216..13424240 (25 bp)
TCGGCTTGTCAAACCAAACACGGCC
LOC_Os11g24430
OsAffx.7189.1.S1_at--548--10711Chr11:13424221..13424245 (25 bp)
TTGTCAAACCAAACACGGCCCCTCT
LOC_Os11g24430
OsAffx.7189.1.S1_at--652--3531Chr11:13424246..13424270 (25 bp)
CATCTCCACCATCCATGTGACGCTT
LOC_Os11g24430
Target Sequence 
TTAATCTACCACAGGGTTCGGCTTGTCAAACCAAACACGGCCCCTCTCATCTCCACCATCCATGTGACGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.7189.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis