Browse Element(s) Details


Os.37494.1.S1_x_at

Description gb:AF010583.1
DB_XREF= gi:2331138
TID=Os.37494.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.37494 (NCBI UniGene Cluster)
UG_TITLE=2-oxoglutaratemalate translocator mRNA, partial cds
DEF=Oryza sativa 2-oxoglutaratemalate translocator mRNA, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g244505/11Mitochondrial carrier protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24420NANA11+13417006..13417547hypothetical protein
LOC_Os11g24430OsAffx.7189.1.S1_at10/1111+13423830..13424303hypothetical protein
LOC_Os11g24440OsAffx.7190.1.S1_at11/1111+13431797..13432282hypothetical protein
LOC_Os11g24450Os.11670.1.S1_at11/1111+13441302..13445242Mitochondrial carrier protein, expressed
LOC_Os11g24450OsAffx.31123.1.S1_x_at11/1111+13441302..13445242Mitochondrial carrier protein, expressed
LOC_Os11g24450Os.37494.1.S1_x_at5/1111+13441302..13445242Mitochondrial carrier protein, expressed
LOC_Os11g24460OsAffx.18990.1.S1_at11/1111+13447366..13450322hypothetical protein
LOC_Os11g24470NANA11+13452881..13453548transposon protein, putative, Pong sub-class
LOC_Os11g24484Os.5278.1.S1_at11/1111+13456176..13464178oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g24484Os.7026.2.S1_at1/1111+13456176..13464178oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g24500Os.47897.1.S1_at11/1111+13469201..13471147expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0006839biological_processmitochondrial transport
GO:0005739cellular_componentmitochondrion
GO:0005743cellular_componentmitochondrial inner membrane
GO:0005488molecular_functionbinding
GO:0017077molecular_functionoxidative phosphorylation uncoupler activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.37494.1.S1_x_at--991--4711NONE
GCTGGAGAATTCACTACTGTACTTG
NONE
Os.37494.1.S1_x_at--511--6831Chr11:13444605..13444629 (25 bp)
GTTTCAGGGTTATGTGCGTCTGCTT
LOC_Os11g24450
Os.37494.1.S1_x_at--585--7171NONE
GTCTGCTTGCATTTTACCCTTTGAT
NONE
Os.37494.1.S1_x_at--822--2331Chr11:13444667..13444691 (25 bp)
AAAGATGCAGCCTGATGCCTCCGGG
LOC_Os11g24450
Os.37494.1.S1_x_at--780--6351Chr11:13444680..13444704 (25 bp)
GATGCCTCCGGGAAGTATCCATACA
LOC_Os11g24450
Os.37494.1.S1_x_at--999--2171Chr11:13444702..13444726 (25 bp)
ACACTGGGTCTCTTGATTGTGCCAT
LOC_Os11g24450
Os.37494.1.S1_x_at--912--8051NONE
GGACGCCCATTTAAGTTTAACACTG
NONE
Os.37494.1.S1_x_at--849--9811NONE
TAACACTGGGTTTCCTGTGTACTGT
NONE
Os.37494.1.S1_x_at--282--7451Chr11:13444783..13444807 (25 bp)
GTGTCAGGATTGCACCACATGCCAT
LOC_Os11g24450
Os.37494.1.S1_x_at--725--9431NONE
TCGGTCATGCTGTCCTAACCTAAGA
NONE
Os.37494.1.S1_x_at--398--811NONE
ATGGTTCCTTGGTGGTTTGAGCTAT
NONE
Target Sequence 
GCTGGAGAATTCACTACTGTACTTGGGGCCAGTGCTGTTTCAGGGTTATGTGCGTCTGCTTGCATTTTACCCTTTGATTA
TGTGAAGACACAGATTCCAAAGATGCAGCCTGATGCCTCCGGGAAGTATCCATACACTGGGTCTCTTGATTGTGCCATGA
AAACCTTGAAGAGTGGACGCCCATTTAAGTTTAACACTGGGTTTCCTGTGTACTGTGTCAGGATTGCACCACATGCCATG
ATGAATTGGATATTCCTAAATGAGATCCAGAAGCTCGAGAAGGGTTTAGGCCTTTAAGAGGTGGTTGGTTCGGTCATGCT
GTCCTAACCTAAGAAATAACAACAGTTCAGGTGTAAATAGTTGAGCAATTGTTTTTGATAAACAAAATTTTTAGCCTATA
TGGTTCCTTGGTGGTTTGAGCTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.37494.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis