Browse Element(s) Details


Os.5278.1.S1_at

Description gb:AK059916.1
DB_XREF= gi:32969934
TID=Os.5278.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.5278 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-209-E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:006-209-E12, full insert sequence.
FL= gb:AK059916.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2448411/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24440OsAffx.7190.1.S1_at11/1111+13431797..13432282hypothetical protein
LOC_Os11g24450Os.11670.1.S1_at11/1111+13441302..13445242Mitochondrial carrier protein, expressed
LOC_Os11g24450OsAffx.31123.1.S1_x_at11/1111+13441302..13445242Mitochondrial carrier protein, expressed
LOC_Os11g24450Os.37494.1.S1_x_at5/1111+13441302..13445242Mitochondrial carrier protein, expressed
LOC_Os11g24460OsAffx.18990.1.S1_at11/1111+13447366..13450322hypothetical protein
LOC_Os11g24470NANA11+13452881..13453548transposon protein, putative, Pong sub-class
LOC_Os11g24484Os.5278.1.S1_at11/1111+13456176..13464178oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g24484Os.7026.2.S1_at1/1111+13456176..13464178oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g24500Os.47897.1.S1_at11/1111+13469201..13471147expressed protein
LOC_Os11g24510Os.6594.1.S1_at10/1111+13471441..13479388Serine carboxypeptidase family protein, expressed
LOC_Os11g24510OsAffx.3427.1.S1_at1/1111+13471441..13479388Serine carboxypeptidase family protein, expressed
LOC_Os11g24510Os.4698.1.S1_at1/1111+13471441..13479388Serine carboxypeptidase family protein, expressed
LOC_Os11g24520OsAffx.18991.1.S1_at11/1111+13483170..13483496hypothetical protein
LOC_Os11g24530OsAffx.18992.1.S1_at11/1111+13486352..13488220pentatricopeptide, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0042335biological_processcuticle biosynthesis
GO:0004022molecular_functionalcohol dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5278.1.S1_at--883--4411Chr11:13463625..13463647 (23 bp)
GCCAGATACCATTATATGTCGCCAC
LOC_Os11g24484
Os.5278.1.S1_at--414--771Chr11:13463638..13463662 (25 bp)
ATGTCGCCACAAAGATGTCACCTGT
LOC_Os11g24484
Os.5278.1.S1_at--242--8711Chr11:13463660..13463684 (25 bp)
TGTCCAGGGTAACTCGCCGTTTATA
LOC_Os11g24484
Os.5278.1.S1_at--665--8711Chr11:13463714..13463738 (25 bp)
TGTCCGCTGCATCGGTTATGAGCCA
LOC_Os11g24484
Os.5278.1.S1_at--491--10431Chr11:13463729..13463753 (25 bp)
TTATGAGCCAAGATGTGTCCCCTAC
LOC_Os11g24484
Os.5278.1.S1_at--213--6371Chr11:13463765..13463789 (25 bp)
GATCCAGTGGTTCTTTGCATCTCTA
LOC_Os11g24484
Os.5278.1.S1_at--1051--9051Chr11:13463780..13463804 (25 bp)
TGCATCTCTACTGCCAGATTCTGTT
LOC_Os11g24484
Os.5278.1.S1_at--286--10611Chr11:13463798..13463822 (25 bp)
TTCTGTTCTGAATCTATGGCGTCTC
LOC_Os11g24484
Os.5278.1.S1_at--809--8351Chr11:13463815..13463839 (25 bp)
GGCGTCTCCAGGTTGGAATCCGGAA
LOC_Os11g24484
Os.5278.1.S1_at--156--6811Chr11:13464051..13464075 (25 bp)
GTTTTGTTTGCACCTCTAGCACTAT
LOC_Os11g24484
Os.5278.1.S1_at--517--7011Chr11:13464108..13464132 (25 bp)
GTACTTTTCCATTCAGTGTAATCGA
LOC_Os11g24484
Target Sequence 
GCCAGATACCATTATATGTCGCCACAAAGATGTCACCTGTCCAGGGTAACTCGCCGTTTATACCATCACCCGAGGAGTAC
GCCAAGGCTGCTGTCCGCTGCATCGGTTATGAGCCAAGATGTGTCCCCTACTGGCGCCACTCGATCCAGTGGTTCTTTGC
ATCTCTACTGCCAGATTCTGTTCTGAATCTATGGCGTCTCCAGGTTGGAATCCGGAAGAGAAATCAGATGAAGGTTCTGC
TTGGTGAGAGCGATCATGGATTCAGTTAAACTGCCATAAATGTTGGTTTTGTGAAGTGTGTGTTAATCTATTCNGAACAA
AATAGTATATACATCAATCTGGGATTTGGGTAGTAGTATATACTTCGATGAGTTATGTGCTGAATATAATGGAATGGCAT
TTAGTGTTTGTTTTGAACTTTGGGTAGTGGTTTTGTTTGCACCTCTAGCACTATTTTTTATTGGTTTGTGCGAGTTGGAA
TTATTAGTACTTTTCCATTCAGTGTAATCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5278.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis