Browse Element(s) Details


Os.47897.1.S1_at

Description gb:AK107478.1
DB_XREF= gi:32992687
TID=Os.47897.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.47897 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-129-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-129-B11, full insert sequence.
FL= gb:AK107478.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2450011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24450Os.11670.1.S1_at11/1111+13441302..13445242Mitochondrial carrier protein, expressed
LOC_Os11g24450OsAffx.31123.1.S1_x_at11/1111+13441302..13445242Mitochondrial carrier protein, expressed
LOC_Os11g24450Os.37494.1.S1_x_at5/1111+13441302..13445242Mitochondrial carrier protein, expressed
LOC_Os11g24460OsAffx.18990.1.S1_at11/1111+13447366..13450322hypothetical protein
LOC_Os11g24470NANA11+13452881..13453548transposon protein, putative, Pong sub-class
LOC_Os11g24484Os.5278.1.S1_at11/1111+13456176..13464178oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g24484Os.7026.2.S1_at1/1111+13456176..13464178oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g24500Os.47897.1.S1_at11/1111+13469201..13471147expressed protein
LOC_Os11g24510Os.6594.1.S1_at10/1111+13471441..13479388Serine carboxypeptidase family protein, expressed
LOC_Os11g24510OsAffx.3427.1.S1_at1/1111+13471441..13479388Serine carboxypeptidase family protein, expressed
LOC_Os11g24510Os.4698.1.S1_at1/1111+13471441..13479388Serine carboxypeptidase family protein, expressed
LOC_Os11g24520OsAffx.18991.1.S1_at11/1111+13483170..13483496hypothetical protein
LOC_Os11g24530OsAffx.18992.1.S1_at11/1111+13486352..13488220pentatricopeptide, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0048366biological_processleaf development
GO:0009706cellular_componentchloroplast inner membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.47897.1.S1_at--166--3131Chr11:13469623..13469647 (25 bp)
AATTTATCTGCTTTGCGTCCACTTA
LOC_Os11g24500
Os.47897.1.S1_at--631--7232Chr07:23787076..23787105 (23 bp)
GTCCACTTAACTCTTACTTCAGTTC
NONE
Os.47897.1.S1_at--178--9391Chr11:13469509..13469533 (25 bp)
TCGTAAACTGTAGGGATTTTTCATT
LOC_Os11g24500
Os.47897.1.S1_at--156--10471Chr11:13469478..13469502 (25 bp)
TTACCATTGTGACTTATCTTATCAA
LOC_Os11g24500
Os.47897.1.S1_at--1138--10411Chr11:13469460..13469484 (25 bp)
TTATCAATCTTTTGTCTCAGCCTTT
LOC_Os11g24500
Os.47897.1.S1_at--843--2072Chr02:22955..23137 (25 bp)
ACAGTCAAGACATCAAGTAGTAGCA
NONE
Os.47897.1.S1_at--16--10251Chr11:13469285..13469309 (25 bp)
TTTGGCACATCGTCTTATCTATTAC
LOC_Os11g24500
Os.47897.1.S1_at--211--7151Chr11:13469274..13469298 (25 bp)
GTCTTATCTATTACTGAAGGTTGCA
LOC_Os11g24500
Os.47897.1.S1_at--651--7911Chr11:13469256..13469280 (25 bp)
GGTTGCATATATTCTGATCCTGTAT
LOC_Os11g24500
Os.47897.1.S1_at--1084--10591Chr11:13469245..13469269 (25 bp)
TTCTGATCCTGTATTACCTGATTAT
LOC_Os11g24500
Os.47897.1.S1_at--334--152Chr11:13469233..13469257 (25 bp)
ATTACCTGATTATTCTTTTCTGCGA
LOC_Os11g24500
Target Sequence 
AATTTATCTGCTTTGCGTCCACTTAACTCTTACTTCAGTTCTTTCTTTTACATGTAAATATTGGTTGCATAAAATCTATT
TTTGGTTGTTTACGAGTTTACCGACATTCTGAAATCGTAAACTGTAGGGATTTTTCATTTTGTTCTTACCATTGTGACTT
ATCTTATCAATCTTTTGTCTCAGCCTTTTAGGTCTGAATTAAACGCAGAGAGTTGGAACAGTCAAGACATCAAGTAGTAG
CAGATTATCACTACGTTTCAAGGTGTTCCAGAAATCCTGACACAAGATCAAATTTATAATTCTGATTAAGCACTGTAGCA
CATCATCACCATTAGTTGTTTGGCACATCGTCTTATCTATTACTGAAGGTTGCATATATTCTGATCCTGTATTACCTGAT
TATTCTTTTCTGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.47897.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis