Browse Element(s) Details


Os.6594.1.S1_at

Description gb:AK069378.1
DB_XREF= gi:32979402
TID=Os.6594.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=5
UG=Os.6594 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012E22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012E22, full insert sequence.
FL= gb:AK069378.1 gb:AK059355.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2451010/11Serine carboxypeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24460OsAffx.18990.1.S1_at11/1111+13447366..13450322hypothetical protein
LOC_Os11g24470NANA11+13452881..13453548transposon protein, putative, Pong sub-class
LOC_Os11g24484Os.5278.1.S1_at11/1111+13456176..13464178oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g24484Os.7026.2.S1_at1/1111+13456176..13464178oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g24500Os.47897.1.S1_at11/1111+13469201..13471147expressed protein
LOC_Os11g24510Os.6594.1.S1_at10/1111+13471441..13479388Serine carboxypeptidase family protein, expressed
LOC_Os11g24510OsAffx.3427.1.S1_at1/1111+13471441..13479388Serine carboxypeptidase family protein, expressed
LOC_Os11g24510Os.4698.1.S1_at1/1111+13471441..13479388Serine carboxypeptidase family protein, expressed
LOC_Os11g24520OsAffx.18991.1.S1_at11/1111+13483170..13483496hypothetical protein
LOC_Os11g24530OsAffx.18992.1.S1_at11/1111+13486352..13488220pentatricopeptide, putative, expressed
LOC_Os11g24540Os.6096.1.S1_a_at10/1111+13496313..13507143signal peptide peptidase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0019748biological_processsecondary metabolism
GO:0004185molecular_functionserine carboxypeptidase activity
GO:0016752molecular_functionsinapoyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6594.1.S1_at--823--7771Chr11:13472876..13472900 (25 bp)
GGTGCCATGACGATGGACTACCTTA
LOC_Os11g24510
Os.6594.1.S1_at--146--8131Chr11:13472862..13472886 (25 bp)
GGACTACCTTATTCTCAGGACATAG
LOC_Os11g24510
Os.6594.1.S1_at--884--6971Chr11:13472824..13472848 (25 bp)
GTACCATCAAAATCTTACATCTAGA
LOC_Os11g24510
Os.6594.1.S1_at--96--9891Chr11:13472809..13472833 (25 bp)
TACATCTAGAGGCTATCGTGTCTTG
LOC_Os11g24510
Os.6594.1.S1_at--200--10151Chr11:13472801..13472820 (20 bp)
TATCGTGTCTTGGTATACAGTGGCG
LOC_Os11g24510
Os.6594.1.S1_at--368--9871NONE
TACAGTGGCGACCATGATTCCGTGG
NONE
Os.6594.1.S1_at--178--7231Chr11:13472445..13472469 (25 bp)
GTGGTTCCATTTTTGGGTACACAAG
LOC_Os11g24510
Os.6594.1.S1_at--102--671Chr11:13471616..13471640 (25 bp)
ATGAATGATACATCCCTTGGCCAGT
LOC_Os11g24510
Os.6594.1.S1_at--775--6471Chr11:13471610..13471634 (25 bp)
GATACATCCCTTGGCCAGTTCATTG
LOC_Os11g24510
Os.6594.1.S1_at--1088--1011Chr11:13471578..13471602 (25 bp)
AGGTAGCTCAGGTGAGGCGCATTAT
LOC_Os11g24510
Os.6594.1.S1_at--1034--1271Chr11:13471475..13471499 (25 bp)
AGATCTCTCAGTGATACTCTCTTCG
LOC_Os11g24510
Target Sequence 
GGTGCCATGACGATGGACTACCTTATTCTCAGGACATAGAGAGCAGTATTAAGTACCATCAAAATCTTACATCTAGAGGC
TATCGTGTCTTGGTATACAGTGGCGACCATGATTCCGTGGTTCCATTTTTGGGTACACAAGCCTGGGTAAGATCACTCAA
CTACCCAATTGTGGATGACTGGAGAGCCTGGCATATCGATGGGCAGTCTGCAGGATTCACAATCACATATGCAAATGACT
TGACCTTCGCTACGGTAAAGGGTGGTGGACACACTGCACCAGAGTACCAGCCGGAGAGGTGTCTTGCAATGTTTGGGAGA
TGGATTTCAGAGAAATCACTTTGACGNTTGTGTATATCAGTTATGATGAGAGCTGCTTTGATTATTANCTAATGAATGAT
ACATCCCTTGGCCAGTTCATTGGGCAAGGAGGTAGCTCAGGTGAGGCGCATTATGGTAGAACATGCCACAGAGGACCAGA
ACAAGCTTTAGATGATTACTAAAGTGAATATGAAAGGATACAAATAATCCTGAGATCTCTCAGTGATACTCTCTTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6594.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis