Browse Element(s) Details


OsAffx.18992.1.S1_at

Description tigr:9639.m02169
TID=OsAffx.18992.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g2453011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g24484Os.5278.1.S1_at11/1111+13456176..13464178oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g24484Os.7026.2.S1_at1/1111+13456176..13464178oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os11g24500Os.47897.1.S1_at11/1111+13469201..13471147expressed protein
LOC_Os11g24510Os.6594.1.S1_at10/1111+13471441..13479388Serine carboxypeptidase family protein, expressed
LOC_Os11g24510OsAffx.3427.1.S1_at1/1111+13471441..13479388Serine carboxypeptidase family protein, expressed
LOC_Os11g24510Os.4698.1.S1_at1/1111+13471441..13479388Serine carboxypeptidase family protein, expressed
LOC_Os11g24520OsAffx.18991.1.S1_at11/1111+13483170..13483496hypothetical protein
LOC_Os11g24530OsAffx.18992.1.S1_at11/1111+13486352..13488220pentatricopeptide, putative, expressed
LOC_Os11g24540Os.6096.1.S1_a_at10/1111+13496313..13507143signal peptide peptidase family protein, expressed
LOC_Os11g24550OsAffx.31110.1.S1_at11/1111+13508561..13509685BTB/POZ domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18992.1.S1_at--876--9971Chr11:13487632..13487656 (25 bp)
TACCTATGTGGGATTGCTCTCAGCA
LOC_Os11g24530
OsAffx.18992.1.S1_at--662--9651Chr11:13487651..13487675 (25 bp)
TCAGCATGTAGCCACGCCGGTTTAG
LOC_Os11g24530
OsAffx.18992.1.S1_at--728--7951Chr11:13487713..13487737 (25 bp)
GGATAACTCCATTGTAGTGCGTGAT
LOC_Os11g24530
OsAffx.18992.1.S1_at--753--7911Chr11:13487755..13487779 (25 bp)
GGTTGATCTTTGTAGCCGAGCTGGA
LOC_Os11g24530
OsAffx.18992.1.S1_at--738--371Chr11:13487830..13487854 (25 bp)
ATCAAGTACCGTTTGGAGTGCCCTT
LOC_Os11g24530
OsAffx.18992.1.S1_at--434--6111Chr11:13487845..13487869 (25 bp)
GAGTGCCCTTCTAGGTGGATGCAAT
LOC_Os11g24530
OsAffx.18992.1.S1_at--580--9131Chr11:13487935..13487959 (25 bp)
TGCTGGAACTTATACTCTCTTGTGT
LOC_Os11g24530
OsAffx.18992.1.S1_at--141--2911Chr11:13488071..13488095 (25 bp)
AAGGTTCATGTATTTGTTTCCCGTG
LOC_Os11g24530
OsAffx.18992.1.S1_at--186--6831Chr11:13488086..13488110 (25 bp)
GTTTCCCGTGATAAATCCCACAGTG
LOC_Os11g24530
OsAffx.18992.1.S1_at--711--6411Chr11:13488128..13488152 (25 bp)
GATCTGCTGCAGGATATTCATCGCA
LOC_Os11g24530
OsAffx.18992.1.S1_at--922--691Chr11:13488155..13488179 (25 bp)
ATGAGAATGGCTGGTACTGTTCCCA
LOC_Os11g24530
Target Sequence 
TACCTATGTGGGATTGCTCTCAGCATGTAGCCACGCCGGTTTAGTGGATGAAGGGCTTAAGATCTTTGAATCCATGGTAA
AGGATAACTCCATTGTAGTGCGTGATGAACATTACACTTGCTTGGTTGATCTTTGTAGCCGAGCTGGACGGCTTGAGGAT
GCTAAAAGATTAATTAGCTGGTTCAAGATTAAACCTACATCAAGTACCGTTTGGAGTGCCCTTCTAGGTGGATGCAATTC
ACATGGAAATGAAAGTATTGGTGATTTAGCGGCTAAACATCTCTTGGAAGCAGAACCTGATAATGCTGGAACTTATACTC
TCTTGTGTAACATTTATGCTTCAGCTGGTAAATGGAAAGAAGCAGCAGAAATTAGGTCAGAGATGAATGTTCGAGGGCTA
AAGAAACAGCCAGGGTGTAGTTGGATCGAGGTGGCAAATAAGGTTCATGTATTTGTTTCCCGTGATAAATCCCACAGTGA
ATCTGACTTGATCAATGATCTGCTGCAGGATATTCATCGCATTATGAGAATGGCTGGTACTGTTCCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18992.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis