Browse Element(s) Details


Os.48467.1.S1_at

Description gb:AK062566.1
DB_XREF= gi:32972584
TID=Os.48467.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48467 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013060B14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-045-H08, full insert sequence.
FL= gb:AK099640.1 gb:AK062566.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3369011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g33644OsAffx.27142.1.S1_at10/115+19711657..19722494inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed
LOC_Os05g33660NANA5+19727993..19728301hypothetical protein
LOC_Os05g33670OsAffx.27143.1.S1_at3/115+19729760..19730047hypothetical protein
LOC_Os05g33680OsAffx.27144.2.S1_s_at11/115+19731594..19734629hypothetical protein
LOC_Os05g33680Os.57402.1.S1_at11/115+19731594..19734629hypothetical protein
LOC_Os05g33690Os.48467.1.S1_at11/115+19745329..19747687Leucine Rich Repeat family protein, expressed
LOC_Os05g33700OsAffx.27145.1.S1_at10/115+19750857..197551994F5 protein family protein
LOC_Os05g33700OsAffx.3509.1.S1_at5/115+19750857..197551994F5 protein family protein
LOC_Os05g33700Os.27131.1.S1_at1/115+19750857..197551994F5 protein family protein
LOC_Os05g33700Os.5698.1.S1_s_at1/115+19750857..197551994F5 protein family protein
LOC_Os05g33710Os.57321.1.S1_at11/115+19755355..19763441LEC14B protein, putative, expressed
LOC_Os05g33710Os.15190.1.A1_at11/115+19755355..19763441LEC14B protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007165biological_processsignal transduction
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48467.1.S1_at--732--751Chr05:19747130..19747154 (25 bp)
ATGTACAACTGCATGGTGCCGCCGG
LOC_Os05g33690
Os.48467.1.S1_at--725--2351Chr05:19747234..19747258 (25 bp)
AAAGCTGGCAACACAACGCCGACGC
LOC_Os05g33690
Os.48467.1.S1_at--964--4151Chr05:19747270..19747294 (25 bp)
CGCCTCGGATCGTCCAAGCTCAAGA
LOC_Os05g33690
Os.48467.1.S1_at--1045--4671Chr05:19747327..19747351 (25 bp)
GCGGTCTCCGATTCTTTGATTAATT
LOC_Os05g33690
Os.48467.1.S1_at--257--8711Chr05:19747352..19747376 (25 bp)
TGTCCAGTTACTAGCGTTCCAATGT
LOC_Os05g33690
Os.48467.1.S1_at--420--6691Chr05:19747367..19747391 (25 bp)
GTTCCAATGTGGATTACTATTCTTT
LOC_Os05g33690
Os.48467.1.S1_at--380--10411Chr05:19747457..19747481 (25 bp)
TTATAGGCGTAATTTCTTTCTCCTT
LOC_Os05g33690
Os.48467.1.S1_at--765--7431Chr05:19747498..19747522 (25 bp)
GTGTATGTTCTTTTGTGTCCCCTGC
LOC_Os05g33690
Os.48467.1.S1_at--535--8711Chr05:19747513..19747537 (25 bp)
TGTCCCCTGCTGTATAGTTGCGTGA
LOC_Os05g33690
Os.48467.1.S1_at--643--4091Chr05:19747575..19747599 (25 bp)
CGACGATCGATTGATGTATCTGATG
LOC_Os05g33690
Os.48467.1.S1_at--931--10351Chr05:19747641..19747665 (25 bp)
TTATATATCGCATTGCCATTGGGCA
LOC_Os05g33690
Target Sequence 
ATGTACAACTGCATGGTGCCGCCGGTGTACGCGCCGTGCCCGCTCAAGGCCGGCTCGACGAACACCCGGCCGGCCGACCA
GTGCCCGGAGTGGAGGGGCTAATCAAAGCTGGCAACACAACGCCGACGCCATTGCCGGATCGCCTCGGATCGTCCAAGCT
CAAGAAAACCGGAAAAGAATGGAGGAGATTGCAAATGGCGGTCTCCGATTCTTTGATTAATTTGTCCAGTTACTAGCGTT
CCAATGTGGATTACTATTCTTTTTGGTTGGGGGGAGATGGATGGAGATAGTCACAGACAAGAAGTAAGTTCCTTAATAAT
CTTGGGTTTATAGGCGTAATTTCTTTCTCCTTTTTTTGTGTTTAGGTGGTGTATGTTCTTTTGTGTCCCCTGCTGTATAG
TTGCGTGAGTAGTAAAACATTGGCTCTTGATGTTATGTGAGGTGGCGACGATCGATTGATGTATCTGATGATGATCATGA
TGATGGTGGTGTTAGAAATCTGTGATGTTATTTATATATCGCATTGCCATTGGGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48467.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis