Browse Element(s) Details


Os.48944.1.A1_at

Description gb:AK070169.1
DB_XREF= gi:32980193
TID=Os.48944.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.48944 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023042P16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023042P16, full insert sequence.
FL= gb:AK070169.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1749011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17432OsAffx.12898.1.S1_at11/113+9678228..9679442pre-mRNA splicing factor ATP-dependent RNA helicase mog-4, putative
LOC_Os03g17440Os.17031.1.S1_at11/113+9679555..9682476expressed protein
LOC_Os03g17450Os.47468.1.A1_s_at11/113+9682748..9686229expressed protein
LOC_Os03g17450Os.46888.1.S1_at11/113+9682748..9686229expressed protein
LOC_Os03g17460Os.38428.1.S1_at11/113+9687259..9689143IN2-1 protein, putative, expressed
LOC_Os03g17470Os.27671.1.S1_at11/113+9691275..9693994IN2-1 protein, putative, expressed
LOC_Os03g17480Os.2376.1.S1_at9/113+9696304..9698958IN2-1 protein, putative, expressed
LOC_Os03g17490Os.48944.1.A1_at11/113+9700976..9704055expressed protein
LOC_Os03g17500Os.52075.1.S1_at11/113+9704342..9706595expressed protein
LOC_Os03g17510Os.54308.1.S1_at11/113+9709492..9711997pentatricopeptide, putative, expressed
LOC_Os03g17520Os.6197.1.S1_at11/113+9712198..9716610CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase family protein, expressed
LOC_Os03g17530OsAffx.25122.1.S1_at11/113+9718076..9718633hypothetical protein
LOC_Os03g17540Os.40027.1.A1_at10/113+9722817..9729772TBC domain containing protein, expressed
LOC_Os03g17540Os.27859.1.S1_at1/113+9722817..9729772TBC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48944.1.A1_at--320--2311Chr03:9703285..9703399 (25 bp)
AAAGGCACGAGCTCTTAGGTTTGCA
LOC_Os03g17490
Os.48944.1.A1_at--1004--351Chr03:9703561..9703585 (25 bp)
ATAATGGAAGCACTCCCTGCCTTTT
LOC_Os03g17490
Os.48944.1.A1_at--50--8691Chr03:9703676..9703696 (21 bp)
TGTGAGATCTCGGACATGGCCCTTA
LOC_Os03g17490
Os.48944.1.A1_at--528--411Chr03:9703736..9703760 (25 bp)
ATCAGTGGCATCATGTTTTCTCCTA
LOC_Os03g17490
Os.48944.1.A1_at--64--10391Chr03:9703751..9703775 (25 bp)
TTTTCTCCTAGCCATGTTGAGTGCT
LOC_Os03g17490
Os.48944.1.A1_at--863--3871Chr03:9703781..9703805 (25 bp)
CTGTGTTGACTTGCTTACGGTACTT
LOC_Os03g17490
Os.48944.1.A1_at--695--7011Chr03:9703800..9703824 (25 bp)
GTACTTCCCTAGCAGTGTAGCTTGA
LOC_Os03g17490
Os.48944.1.A1_at--1151--8931Chr03:9703822..9703846 (25 bp)
TGACTTGCTGCTTGGTTTGGGATAA
LOC_Os03g17490
Os.48944.1.A1_at--1143--10451Chr03:9703860..9703884 (25 bp)
TTACCTCCCTCTTTTAATGACCATG
LOC_Os03g17490
Os.48944.1.A1_at--190--2991Chr03:9703875..9703899 (25 bp)
AATGACCATGGCTCCTTAGGTATGT
LOC_Os03g17490
Os.48944.1.A1_at--754--10031Chr03:9703959..9703983 (25 bp)
TAGATGCTTCCTTCGTGTTACAAAA
LOC_Os03g17490
Target Sequence 
AAAGGCACGAGCTCTTAGGTTTGCAGAAACATCTAGTGGACCATCTCAAGAAAATGGCAAAGACAGCTCCAAGCCGACGC
AGGACGCGGCCACTGTGGCAGGCACGGCATAATGGAAGCACTCCCTGCCTTTTGTGAGATCTCGGACATGGCCCTTACTT
TTGGGGTGAAGCCGTAGTTTGTACAACACTAACGACATCAGTGGCATCATGTTTTCTCCTAGCCATGTTGAGTGCTATTT
ACTGTGTTGACTTGCTTACGGTACTTCCCTAGCAGTGTAGCTTGACTTGCTGCTTGGTTTGGGATAATACTGTACTTTTG
TTACCTCCCTCTTTTAATGACCATGGCTCCTTAGGTATGTACCAGTAGTAACTTATGTTGTTGTAGTTAGCTTTTAAGAC
GTTATCGTATTCTAAGTTTTAGATGCTTCCTTCGTGTTACAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48944.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis