Browse Element(s) Details


Os.4901.1.S1_at

Description gb:AU181981
DB_XREF= gi:13807526
DB_XREF=AU181981
CLONE=C62093
TID=Os.4901.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.4901 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative Myb-related transcription factor-l (P0445E10.25), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4916011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g49110Os.53602.1.S1_at11/111+28550877..28561702protein prenyltransferase alpha subunit, putative, expressed
LOC_Os01g49110Os.33918.1.S1_x_at11/111+28550877..28561702protein prenyltransferase alpha subunit, putative, expressed
LOC_Os01g49110Os.41701.1.S1_x_at3/111+28550877..28561702protein prenyltransferase alpha subunit, putative, expressed
LOC_Os01g49120Os.14869.1.S1_at11/111+28561908..28565479MATE efflux family protein, expressed
LOC_Os01g49120Os.41694.1.S1_at8/111+28561908..28565479MATE efflux family protein, expressed
LOC_Os01g49130NANA1+28566917..28567405hypothetical protein
LOC_Os01g49140OsAffx.23722.1.S1_at8/111+28568614..28569233expressed protein
LOC_Os01g49150OsAffx.23723.2.S1_at10/111+28569825..28574144Anti-silencing protein, ASF1-like containing protein, expressed
LOC_Os01g49150OsAffx.23723.1.S1_at10/111+28569825..28574144Anti-silencing protein, ASF1-like containing protein, expressed
LOC_Os01g49160Os.4901.1.S1_at11/111+28576998..28578364Myb-like DNA-binding domain containing protein, expressed
LOC_Os01g49180OsAffx.21494.1.S1_x_at11/111+28588263..28599915DNA ligase I, ATP-dependent family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4901.1.S1_at--339--9371Chr01:28577938..28577962 (25 bp)
TCGACGACGTGTTCTTGCCCGAGCT
LOC_Os01g49160
Os.4901.1.S1_at--955--8691Chr01:28578121..28578145 (25 bp)
TGTGCCACAGCCTGACATGACAAGT
LOC_Os01g49160
Os.4901.1.S1_at--589--7111Chr01:28578144..28578168 (25 bp)
GTCAGACACTAATGATCCATCCATC
LOC_Os01g49160
Os.4901.1.S1_at--1135--4051Chr01:28578172..28578196 (25 bp)
CGAGAGTGCTCGAGTGATCCATGAC
LOC_Os01g49160
Os.4901.1.S1_at--99--6371Chr01:28578187..28578211 (25 bp)
GATCCATGACGACTAGTCTCAAGTT
LOC_Os01g49160
Os.4901.1.S1_at--871--6631Chr01:28578209..28578233 (25 bp)
GTTGTTGCGTGGCTAGCTTCTTCTT
LOC_Os01g49160
Os.4901.1.S1_at--585--1551Chr01:28578223..28578247 (25 bp)
AGCTTCTTCTTGATTGATTACCTGA
LOC_Os01g49160
Os.4901.1.S1_at--1160--6531Chr01:28578238..28578262 (25 bp)
GATTACCTGATCATCTTTTTCTCCC
LOC_Os01g49160
Os.4901.1.S1_at--690--3651Chr01:28578264..28578288 (25 bp)
CTTCTTCCCGACGAGATTATTACAT
LOC_Os01g49160
Os.4901.1.S1_at--102--10431Chr01:28578294..28578318 (25 bp)
TTATCCTATCTGTACTACGGCTGTT
LOC_Os01g49160
Os.4901.1.S1_at--604--9931Chr01:28578309..28578333 (25 bp)
TACGGCTGTTCCACAGACAGGTTAA
LOC_Os01g49160
Target Sequence 
TCGACGACGTGTTCTTGCCCGAGCTCGTCGGAGCCGGCGAGTTCCCCAACGGCGACCTCTTCGGCGGGTTCGGCCCGCTG
CTCCAGGACAGGTCGTCCATGGAGCTCTCCGCGTGCTACTTCCCCAACGCCGCGGCGGCGGAGATGTGGCCGGCGGCCAC
GGACATCGTCAAGCCGGCCGGGCTGTGCCACAGCCTGACATGACAAGTCAGACACTAATGATCCATCCATCCAACGAGAG
TGCTCGAGTGATCCATGACGACTAGTCTCAAGTTGTTGCGTGGCTAGCTTCTTCTTGATTGATTACCTGATCATCTTTTT
CTCCCCCTTCTTCCCGACGAGATTATTACATGTACATTATCCTATCTGTACTACGGCTGTTCCACAGACAGGTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4901.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis