Browse Element(s) Details


Os.49091.1.S1_at

Description gb:AK064563.1
DB_XREF= gi:32974581
TID=Os.49091.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49091 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-112-D01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-112-D01, full insert sequence.
FL= gb:AK064563.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0527011/11sucrose-phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g05240Os.20065.1.S1_at11/115+2542239..2551171kelch repeat-containing serine/threonine phosphoesterase family protein, putative, expressed
LOC_Os05g05250OsAffx.30226.2.S1_s_at7/115+2552234..2552791retrotransposon protein, putative, unclassified
LOC_Os05g05250OsAffx.442.1.S1_x_at3/115+2552234..2552791retrotransposon protein, putative, unclassified
LOC_Os05g05260Os.53756.1.S1_at9/115+2562822..2568136DNA repair helicase UVH6, putative, expressed
LOC_Os05g05270Os.49091.1.S1_at11/115+2573518..2576476sucrose-phosphatase, putative, expressed
LOC_Os05g05280Os.53552.1.S1_at11/115+2576565..2582182zinc finger family protein, putative, expressed
LOC_Os05g05280Os.2852.1.S1_at1/115+2576565..2582182zinc finger family protein, putative, expressed
LOC_Os05g05290Os.55368.1.S1_at11/115+2583464..2584282expressed protein
LOC_Os05g05300NANA5+2587556..2590142group II intron splicing factor CRS1, putative, expressed
LOC_Os05g05310Os.5008.1.S1_at11/115+2589701..2595265Fibronectin type III domain containing protein, expressed
LOC_Os05g05310Os.5008.1.S2_at11/115+2589701..2595265Fibronectin type III domain containing protein, expressed
LOC_Os05g05320Os.10857.1.S1_at11/115+2596186..2602317expressed protein
LOC_Os05g05320OsAffx.27710.1.S1_at2/115+2596186..2602317expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005986biological_processsucrose biosynthesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0050307molecular_functionsucrose-phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49091.1.S1_at--556--7711Chr05:2575376..2575400 (25 bp)
GGGTGGATAGAATTGTCGCTTCATC
LOC_Os05g05270
Os.49091.1.S1_at--663--7231Chr05:2575390..2575414 (25 bp)
GTCGCTTCATCAATCGGTACAATTA
LOC_Os05g05270
Os.49091.1.S1_at--794--2991Chr05:2575677..2575701 (25 bp)
AATGTTCGGTATTGCTGCCTCACAA
LOC_Os05g05270
Os.49091.1.S1_at--1089--9691Chr05:2575696..2575720 (25 bp)
TCACAACTCTTCTGCTGACTATGAA
LOC_Os05g05270
Os.49091.1.S1_at--991--5351Chr05:2576128..2576152 (25 bp)
GAAGATGGCTTCGAGATTACACACA
LOC_Os05g05270
Os.49091.1.S1_at--972--6551Chr05:2576142..2576166 (25 bp)
GATTACACACATCCACAAGACCTGG
LOC_Os05g05270
Os.49091.1.S1_at--361--1531Chr05:2576192..2576216 (25 bp)
AGCATGCATGCATCCTGTAGGCCAT
LOC_Os05g05270
Os.49091.1.S1_at--500--2871Chr05:2576281..2576305 (25 bp)
AAGTGTACTCACTGTTGCGTGGATT
LOC_Os05g05270
Os.49091.1.S1_at--379--4651Chr05:2576297..2576321 (25 bp)
GCGTGGATTTGATCCCAAATACTCG
LOC_Os05g05270
Os.49091.1.S1_at--33--6351Chr05:2576354..2576378 (25 bp)
GATGCTCTTGCTGATTCATGTACAG
LOC_Os05g05270
Os.49091.1.S1_at--512--171Chr05:2576416..2576440 (25 bp)
ATTTTCTCGATGTACATGGATCTTG
LOC_Os05g05270
Target Sequence 
GGGTGGATAGAATTGTCGCTTCATCAATCGGTACAATTAATTGGCTGGTGAGGTTTGACAAGTGGGAAATGGAAGGCAAT
GTTCGGTATTGCTGCCTCACAACTCTTCTGCTGACTATGAAGCCTGAGACTGAAGATGGCTTCGAGATTACACACATCCA
CAAGACCTGGCTTGAAGGATACTCTGCAGGAAATGAGCATGCATGCATCCTGTAGGCCATTTNAATACANGCAACTTACA
CAGAAACATGAGGAAATTTTCATCAGGAGTCAAGATAGAATAACAAGTGTACTCACTGTTGCGTGGATTTGATCCCAAAT
ACTCGTAGTGTTATACTGGGGTACTCACAAATGGATTGATGCTCTTGCTGATTCATGTACAGTTCATGAAATTAAGCAAA
TAAACTCACTGTACCAGAAATTTTCTCGATGTACATGGATCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49091.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis