Browse Element(s) Details


Os.49124.1.S1_at

Description gb:AK064512.1
DB_XREF= gi:32974530
TID=Os.49124.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49124 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-111-E09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-111-E09, full insert sequence.
FL= gb:AK064512.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2445010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g24410OsAffx.25204.1.S1_at11/113+13883541..13886129hypothetical protein
LOC_Os03g24420OsAffx.3307.1.S1_at11/113+13889373..13892968hypothetical protein
LOC_Os03g24430NANA3+13894821..13896338Flavonol-3-O-glycoside-7-O-glucosyltransferase 1, putative
LOC_Os03g24440OsAffx.25205.1.S1_at11/113+13901614..13902600cytokinin synthase, putative
LOC_Os03g24450Os.49124.1.S1_at10/113+13906387..13913938expressed protein
LOC_Os03g24460Os.26468.1.S2_at10/113+13920266..13927614branched-chain amino acid aminotransferase, putative, expressed
LOC_Os03g24460Os.26468.1.S1_at10/113+13920266..13927614branched-chain amino acid aminotransferase, putative, expressed
LOC_Os03g24470OsAffx.13003.1.S1_at11/113+13929299..13929569hypothetical protein
LOC_Os03g24480OsAffx.25206.1.S1_at11/113+13932055..13933802hypothetical protein
LOC_Os03g24490Os.47463.1.S1_x_at4/113+13934739..13943909transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g24490Os.14491.2.S1_x_at4/113+13934739..13943909transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49124.1.S1_at--375--10591Chr03:13906836..13906860 (25 bp)
TTCTGTGAACACCTCTAGTTCCTTA
LOC_Os03g24450
Os.49124.1.S1_at--655--1231Chr03:13906820..13906844 (25 bp)
AGTTCCTTAGAGTCCAATGCATCAA
LOC_Os03g24450
Os.49124.1.S1_at--716--631Chr03:13906804..13906828 (25 bp)
ATGCATCAACCCATGTTACGAACGG
LOC_Os03g24450
Os.49124.1.S1_at--511--3031Chr03:13906777..13906801 (25 bp)
AATCCACCTCGTCGGAATCTCAGAA
LOC_Os03g24450
Os.49124.1.S1_at--55--1451Chr03:13906699..13906723 (25 bp)
AGAAGAGCCGGACAGGCAGCCTAAT
LOC_Os03g24450
Os.49124.1.S1_at--433--6311Chr03:13906607..13906631 (25 bp)
GATGACGCCCGTTGACGATTTATGT
LOC_Os03g24450
Os.49124.1.S1_at--579--9751Chr03:13906572..13906596 (25 bp)
TAATATAGCCATAGAGCTGCCGCCT
LOC_Os03g24450
Os.49124.1.S1_at--1024--4511Chr03:13906544..13906568 (25 bp)
GCCGCACATGTCCAGCTTGATTGGT
LOC_Os03g24450
Os.49124.1.S1_at--678--7851Chr03:13906448..13906472 (25 bp)
GGTAGTGATCCCATTGATTGTGTAC
LOC_Os03g24450
Os.49124.1.S1_at--239--6611Chr03:13906433..13906457 (25 bp)
GATTGTGTACCATGTGTCTCTCACT
LOC_Os03g24450
Os.49124.1.S1_at--1034--11Chr03:13906385..13906409 (25 bp)
ATTGGCAGGCTTTTGTTACTTGCAA
NONE
Target Sequence 
TTCTGTGAACACCTCTAGTTCCTTAGAGTCCAATGCATCAACCCATGTTACGAACGGAAAATCCACCTCGTCGGAATCTC
AGAAACCAACACAGAACGCCAATGGGGAGGATGGTACAAGAGCAACCCTGGTGGTACAGAAGAGCCGGACAGGCAGCCTA
ATGGATGGACTGACGCACAAATGGGGTTCCTTGTTCAAGAACAATGACTAAGACAAGCAAAAGATATACGATGACGCCCG
TTGACGATTTATGTTATTGTGTGTTAATATAGCCATAGAGCTGCCGCCTCTGGCCGCACATGTCCAGCTTGATTGGTTTA
ATTTACGTGTAAAATGAGAAAGGAAAAAGGGATATACTGTACAAGTGGTGTATATATACAGCTAGGATGGTAGTGATCCC
ATTGATTGTGTACCATGTGTCTCTCACTCAGCACTGCGTTGNATTTGGTGAATTGGCAGGCTTTTGTTACTTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49124.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis