Browse Element(s) Details


Os.49132.1.S1_at

Description gb:AK064865.1
DB_XREF= gi:32974883
TID=Os.49132.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49132 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013000I09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000I09, full insert sequence.
FL= gb:AK064865.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g454909/11expressed protein
LOC_Os02g545006/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g45429NANA2+27638381..27638680NA
LOC_Os02g45440OsAffx.24737.1.S1_at10/112+27640872..27642466hypothetical protein
LOC_Os02g45450Os.51078.1.S1_at11/112+27647066..27648337AP2 domain containing protein, expressed
LOC_Os02g45460Os.35302.1.S1_at11/112+27652994..27654247Uncharacterized conserved protein, putative, expressed
LOC_Os02g45460Os.6266.1.S1_s_at5/112+27652994..27654247Uncharacterized conserved protein, putative, expressed
LOC_Os02g45460Os.6266.1.S1_x_at1/112+27652994..27654247Uncharacterized conserved protein, putative, expressed
LOC_Os02g45470NANA2+27655556..27655789hypothetical protein
LOC_Os02g45480Os.23123.1.S1_at11/112+27656549..27661484Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g45480Os.23123.1.S2_at11/112+27656549..27661484Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g45490Os.49132.1.S1_at9/112+27662040..27665552expressed protein
LOC_Os02g45500OsAffx.19278.3.S1_at11/112+27674372..27675506hypothetical protein
LOC_Os02g45500OsAffx.19278.1.S1_at7/112+27674372..27675506hypothetical protein
LOC_Os02g45500OsAffx.19278.2.S1_s_at2/112+27674372..27675506hypothetical protein
LOC_Os02g45510NANA2+27676250..27678622transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49132.1.S1_at--1007--10752Chr02:33373886..33373910 (25 bp)
TTGAGACGCGCTGAGGTACTGCCTA
LOC_Os02g54500
Os.49132.1.S1_at--367--7012Chr02:33373901..33373925 (25 bp)
GTACTGCCTATCTTTCACATGTTCA
LOC_Os02g54500
Os.49132.1.S1_at--638--2111Chr02:27662572..27662596 (25 bp)
ACATGTTCAACAACTGTGCACACAA
LOC_Os02g45490
Os.49132.1.S1_at--376--8691Chr02:27662558..27662582 (25 bp)
TGTGCACACAATTTCAGTAATACTG
LOC_Os02g45490
Os.49132.1.S1_at--312--3452Chr02:33373950..33373970 (21 bp)
CAGTAATACTGTTCTTTTGACTAAC
LOC_Os02g54500
Os.49132.1.S1_at--645--10392Chr02:33373960..33373984 (25 bp)
TTTTGACTAACTTGTGGCAGGCTTC
LOC_Os02g54500
Os.49132.1.S1_at--368--3492Chr02:33373977..33374001 (25 bp)
CAGGCTTCTGCATCTGACAATGCAG
LOC_Os02g54500
Os.49132.1.S1_at--375--2751NONE
AAGAAGCGTACTTCATCCTTGCTGC
NONE
Os.49132.1.S1_at--980--3652Chr02:33374075..33374095 (21 bp)
CTTCATCCTTGCTGCACACATGCAA
LOC_Os02g54500
Os.49132.1.S1_at--324--9231NONE
TCCTTCCCCTTTTTGTAAGCAGATT
NONE
Os.49132.1.S1_at--608--5111Chr02:27662102..27662126 (25 bp)
GCACTTTTTGTAATATGCCTTGCAA
LOC_Os02g45490
Target Sequence 
TTGAGACGCGCTGAGGTACTGCCTATCTTTCACATGTTCAACAACTGTGCACACAATTTCAGTAATACTGTTCTTTTGAC
TAACTTGTGGCAGGCTTCTGCATCTGACAATGCAGTTTTTTTTCTTATTTTGTTTTTTGGATTTTTACCATGTATTGATC
GTTTAATGTTTTGTAAGAAGCGTACTTCATCCTTGCTGCACACATGCAAAATAGACCAGTGTCATGTGTGCTGATGGCAC
TGGGAGATCAATTGGACGGACAACAGTTTAACCTGTGTTAATTTAACACATAGCAGATGGAGAGGCGCAGGAATACAATG
TAAATAGCATTTTTTGGGGATTTTCCCCTTAGAGCAACATTTTGGAGGCTATGGCAGTTTTTTTCCAGAGAATCAGCTAC
TCGCCATATTGTTGTACCATTAGTTTGTTGAAACAGATTGGAGTGTGCATCCTTCCCCTTTTTGTAAGCAGATTGAAGTG
GGCATTTTTCCCCTTTTTGTAAGCACTTTTTGTAATATGCCTTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49132.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis