Browse Element(s) Details


Os.49134.1.S1_at

Description gb:AK068832.1
DB_XREF= gi:32978857
TID=Os.49134.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49134 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013161E16, full insert sequence.
FL= gb:AK068832.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g172601/11retrotransposon protein, putative, Ty1-copia subclass, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17230OsAffx.16307.1.S1_at11/117+10153757..10158080B3 DNA binding domain containing protein, expressed
LOC_Os07g17240Os.35344.3.S1_x_at9/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17240Os.35344.18.S1_x_at9/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17240OsAffx.22940.2.S1_s_at8/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17240OsAffx.22940.3.S1_x_at6/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17240OsAffx.22940.5.S1_x_at4/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17240OsAffx.22940.1.S1_s_at2/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17250Os.52237.1.S1_at11/117+10171462..10175056NB-ARC domain containing protein, expressed
LOC_Os07g17260Os.10226.1.A1_at11/117+10176922..10186734retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g17260Os.45957.4.S1_x_at6/117+10176922..10186734retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g17260Os.24327.1.A1_at1/117+10176922..10186734retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g17260Os.49134.1.S1_at1/117+10176922..10186734retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g17270Os.49134.2.S1_x_at11/117+10189134..10196114retrotransposon protein, putative, unclassified
LOC_Os07g17270Os.49134.2.S1_at11/117+10189134..10196114retrotransposon protein, putative, unclassified
LOC_Os07g17270Os.31662.1.S1_at1/117+10189134..10196114retrotransposon protein, putative, unclassified
LOC_Os07g17270Os.55230.1.S1_x_at1/117+10189134..10196114retrotransposon protein, putative, unclassified
LOC_Os07g17280Os.49134.2.S1_x_at8/117+10203325..10207221Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g17280Os.49134.2.S1_at6/117+10203325..10207221Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g17290Os.34131.1.S1_s_at9/117+10209817..10211952hAT family dimerisation domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49134.1.S1_at--939--1151Chr07:10179967..10179991 (25 bp)
AGTCAATATGGCTGGTCTTGGACCT
NONE
Os.49134.1.S1_at--864--7132Chr07:10181306..10181330 (25 bp)
GTCTTGGACCTTATGCTGATCTAGT
LOC_Os07g17260
Os.49134.1.S1_at--381--711NONE
ATGATGGAAGCTTCTCCTTTGAGAT
NONE
Os.49134.1.S1_at--1035--4351Chr07:10179776..10179800 (25 bp)
CCACGAGCATGCAGCCATTAATCAT
NONE
Os.49134.1.S1_at--1138--1051Chr07:10179745..10179769 (25 bp)
AGGGTATCTGTGAACCGTGCTAAGA
NONE
Os.49134.1.S1_at--48--4852Chr07:10187323..10187347 (25 bp)
GCTACAGTTTGCAATAACCGATCGA
NONE
Os.49134.1.S1_at--1135--732Chr07:10187377..10187401 (25 bp)
ATGTATGGTGCTACCTCTACCACAT
NONE
Os.49134.1.S1_at--673--651NONE
ATGACTTCTATTCTTGCAGACACCC
NONE
Os.49134.1.S1_at--313--8191Chr07:10178938..10178962 (25 bp)
GGAAGCACGTTTCACGACGATGTTA
NONE
Os.49134.1.S1_at--31--10013Chr07:10196727..10196751 (25 bp)
TAGAATACTCCTAAGGTCCTTTTGG
NONE
Os.49134.1.S1_at--1006--4454Chr07:10196828..10196852 (25 bp)
GCCTGTTGTTGAACCTATGACCTTT
NONE
Target Sequence 
AGTCAATATGGCTGGTCTTGGACCTTATGCTGATCTAGTTAGGCAATTGGATGATGGAAGCTTCTCCTTTGAGATGGAGA
TGGTAAAAAAGGCTAAAACCAACTACGCCCACGAGCATGCAGCCATTAATCATGACTATAGGGTATCTGTGAACCGTGCT
AAGAACAAGATGCATGAAGAAGCTTTAAAAAACACCATACGGCTAATGAATATCTTTGCTACAGTTTGCAATAACCGATC
GACAAGACTAGGCAAACAAATGGGAACTACCATGTATGGTGCTACCTCTACCACATCAATTGCCATCCACAGCACCTAGC
CCCAGCAACAATGTGATGACTTCTATTCTTGCAGACACCCATATCACAAGTGCAGAAACTCCTAAGAAGGTAGCTCTAAC
AAAGGGGACAGCAAGGAAGCACGTTTCACGACGATGTTAGAATACTCCTAAGGTCCTTTTGGTTGTATATGTGCCAATGT
TGGAATGTAAGTAGGCTAATAGTACAGAATGCTATGCGTTGAACTAATATTAGGGTTAGCCTGTTGTTGAACCTATGACC
TTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49134.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis