Browse Element(s) Details


Os.49134.2.S1_x_at

Description gb:AK106993.1
DB_XREF= gi:32992202
TID=Os.49134.2
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49134 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-120-B06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-120-B06, full insert sequence.
FL= gb:AK106993.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1727011/11retrotransposon protein, putative, unclassified
LOC_Os07g172808/11Ser/Thr protein phosphatase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g17240Os.35344.3.S1_x_at9/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17240Os.35344.18.S1_x_at9/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17240OsAffx.22940.2.S1_s_at8/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17240OsAffx.22940.3.S1_x_at6/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17240OsAffx.22940.5.S1_x_at4/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17240OsAffx.22940.1.S1_s_at2/117+10160360..10166992transposon protein, putative, Mutator sub-class
LOC_Os07g17250Os.52237.1.S1_at11/117+10171462..10175056NB-ARC domain containing protein, expressed
LOC_Os07g17260Os.10226.1.A1_at11/117+10176922..10186734retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g17260Os.45957.4.S1_x_at6/117+10176922..10186734retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g17260Os.24327.1.A1_at1/117+10176922..10186734retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g17260Os.49134.1.S1_at1/117+10176922..10186734retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os07g17270Os.49134.2.S1_x_at11/117+10189134..10196114retrotransposon protein, putative, unclassified
LOC_Os07g17270Os.49134.2.S1_at11/117+10189134..10196114retrotransposon protein, putative, unclassified
LOC_Os07g17270Os.31662.1.S1_at1/117+10189134..10196114retrotransposon protein, putative, unclassified
LOC_Os07g17270Os.55230.1.S1_x_at1/117+10189134..10196114retrotransposon protein, putative, unclassified
LOC_Os07g17280Os.49134.2.S1_x_at8/117+10203325..10207221Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g17280Os.49134.2.S1_at6/117+10203325..10207221Ser/Thr protein phosphatase family protein, expressed
LOC_Os07g17290Os.34131.1.S1_s_at9/117+10209817..10211952hAT family dimerisation domain containing protein
LOC_Os07g17300OsAffx.28489.1.S1_at11/117+10216583..10219038hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004722molecular_functionprotein serine/threonine phosphatase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49134.2.S1_x_at--938--8672Chr07:10204121..10204145 (25 bp)
TGTGATGGTTATTGTTCTTCCTCAT
LOC_Os07g17280
Os.49134.2.S1_x_at--972--9572Chr07:10204106..10204130 (25 bp)
TCTTCCTCATCTTCTATTTGTGGTT
LOC_Os07g17280
Os.49134.2.S1_x_at--906--10392Chr07:10204083..10204107 (25 bp)
TTTTGCCTGCGTTTCTCATTATAGC
LOC_Os07g17280
Os.49134.2.S1_x_at--72--1092Chr07:10204042..10204066 (25 bp)
AGGGCAGCATATTTGGTCCACATCT
LOC_Os07g17280
Os.49134.2.S1_x_at--67--10412Chr07:10203589..10203613 (25 bp)
TTGTAGGGCTATCGTTAGGGCATAC
LOC_Os07g17280
Os.49134.2.S1_x_at--495--7592Chr07:10203572..10203596 (25 bp)
GGGCATACGAGGCTAATCCATTCAT
LOC_Os07g17280
Os.49134.2.S1_x_at--456--10692Chr07:10203521..10203545 (25 bp)
TTCCACTACTTGTATGCTTAGCTAT
LOC_Os07g17280
Os.49134.2.S1_x_at--87--10452Chr07:10203403..10203427 (25 bp)
TTAGGTTAGGCATTTGTAGCATTAA
LOC_Os07g17280
Os.49134.2.S1_x_at--1013--5032Chr07:10203294..10203318 (25 bp)
GCAGATCATTTGAGAGCATTCACGT
NONE
Os.49134.2.S1_x_at--376--5932Chr07:10203281..10203305 (25 bp)
GAGCATTCACGTAAATATGGCAGAC
NONE
Os.49134.2.S1_x_at--203--10112Chr07:10203266..10203290 (25 bp)
TATGGCAGACAATTTCTGCCTGCTT
NONE
Target Sequence 
TGTGATGGTTATTGTTCTTCCTCATCTTCTATTTGTGGTTTTGCCTGCGTTTCTCATTATAGCAGCCATAGCAGCAAATA
GGGCAGCATATTTGGTCCACATCTCCCACNAGGCAAANGAAGGATGATGATCACTATGAGGNAAGNAAATGCNATACANC
ATNTTTGGATATTCCGTTGCTTTAGAANGTTTCTTATACTTCTTTGTCTGNCCAATTGCATGGAGACATTGGAAGCATTG
TAGGGCTATCGTTAGGGCATACGAGGCTAATCCATTCATGGNATGCACCTATCTACTGCTTCGGTGNTTCCACTACTTGT
ATGCTTAGCTATNTACNNGGGCCTCAGCTATATGAGTATCTTTTTNGGGTAAGCTTTAAGCAACAATTTCTTATNCAAAT
GNAGTGATTGTACTGNTGGAAGATTGAATATTAGGTTAGGCATTTGTAGCATTAAGGNCTTGGTTATATAGAATGTGCAA
GTCTGAAGTTGTAATGGAACATATCTGAACATGTAGAATCAGTGTTGTTTTATAACATTGCAGATCATTTGAGAGCATTC
ACGTAAATATGGCAGACAATTTCTGCCTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49134.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis