Browse Element(s) Details


Os.49176.1.S1_at

Description gb:AK101444.1
DB_XREF= gi:32986653
TID=Os.49176.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49176 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033039F09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033039F09, full insert sequence.
FL= gb:AK101444.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4469011/11HSPC171 protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g44642Os.49462.1.S1_at11/112+27043049..27056086YDA, putative, expressed
LOC_Os02g44654Os.52745.1.S1_at11/112+27057262..27059364Cytochrome P450 86A2, putative, expressed
LOC_Os02g44654Os.8021.1.S1_x_at1/112+27057262..27059364Cytochrome P450 86A2, putative, expressed
LOC_Os02g44670Os.55089.1.S1_at11/112+27067387..27068221Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44680Os.54838.1.S1_at11/112+27071411..27073134permease, cytosine/purines, uracil, thiamine, allantoin family protein, expressed
LOC_Os02g44690Os.49176.1.S1_at11/112+27073429..27076784HSPC171 protein, putative, expressed
LOC_Os02g44700NANA2+27077078..27077542Zinc finger, C3HC4 type family protein
LOC_Os02g44710OsAffx.24726.1.S1_s_at11/112+27085984..27086938expressed protein
LOC_Os02g44710Os.14092.1.S1_at10/112+27085984..27086938expressed protein
LOC_Os02g44720Os.5213.1.S1_at11/112+27091925..27092693expressed protein
LOC_Os02g44730Os.50950.1.S1_x_at11/112+27097597..27100028tetracycline transporter protein, putative, expressed
LOC_Os02g44740Os.5310.1.A2_x_at11/112+27100007..27104840Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44740Os.5310.1.A1_x_at11/112+27100007..27104840Harpin-induced protein 1 containing protein, expressed
LOC_Os02g44740Os.5310.3.A1_at10/112+27100007..27104840Harpin-induced protein 1 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49176.1.S1_at--646--5671Chr02:27075191..27075215 (25 bp)
GACATCTGCTGCATATTTTCTGCCG
LOC_Os02g44690
Os.49176.1.S1_at--361--10371Chr02:27075176..27075200 (25 bp)
TTTTCTGCCGTACAAGCAACTTGCC
LOC_Os02g44690
Os.49176.1.S1_at--455--5151Chr02:27075161..27075185 (25 bp)
GCAACTTGCCAATATGTCAGAGCCA
LOC_Os02g44690
Os.49176.1.S1_at--265--3631Chr02:27075096..27075119 (24 bp)
CTTGAACGCTGGTGGAATGTCCGAA
LOC_Os02g44690
Os.49176.1.S1_at--63--3771Chr02:27074708..27074732 (25 bp)
CTCTTTGTGCAGCTGATGTCTATTT
LOC_Os02g44690
Os.49176.1.S1_at--505--7951Chr02:27073866..27073890 (25 bp)
GGATACAAGATTTCCGGTCTGTTGA
LOC_Os02g44690
Os.49176.1.S1_at--1035--5911Chr02:27073838..27073862 (25 bp)
GAGCATTTTTCGGTGGTAGTTCAGA
LOC_Os02g44690
Os.49176.1.S1_at--393--2371Chr02:27073646..27073670 (25 bp)
AAACCAGGACTCGTTGATGGCACAT
LOC_Os02g44690
Os.49176.1.S1_at--387--6931Chr02:27073572..27073596 (25 bp)
GTAGGTTTGCTTTACATGGCTGTCC
LOC_Os02g44690
Os.49176.1.S1_at--280--4731Chr02:27073534..27073558 (25 bp)
GCTGTCGGGCAGAATTGTTTCATGA
LOC_Os02g44690
Os.49176.1.S1_at--828--5471Chr02:27073464..27073488 (25 bp)
GAACTAATCCTCTTAACTTATCGAT
LOC_Os02g44690
Target Sequence 
GACATCTGCTGCATATTTTCTGCCGTACAAGCAACTTGCCAATATGTCAGAGCCAGAATACTCTGAGAATGGAGANTTAA
TTAATGCTGGTTATGACTTGAACGCTGGTGGAATGTCCGAATATTTACAAGATGTGATATATNATCACNCTCTTTGTGCA
GCTGATGTCTATTTNNNCTGATAANNTNTGGTGGACATNTTTGGTGATTCCAGCTTATGGTGGATACAAGATTTCCGGTC
TGTTGAGAGGAGCATTTTTCGGTGGTAGTTCAGAGGGCGAAGAAGAGGATGAGAAGACCCGNAAGAAAAGGGAGAAGATG
GAGAAGAAGGCATCTAGGGGGAAGATTATCNAAACCAGGACTCGTTGATGGCACATGTAGTGTATCGGGGCTCGTTGATG
GCTCATGTGTATTATTGTTTGAAGGGTAGGTTTGCTTTACATGGCTGTCCNACTGAAATGTAAGCTGTCGGGCAGAATTG
TTTCATGAATTATTCGATCATTTGCCCCNNCNGCTTAGTAGTAGCACNAATTTGAACTAATCCTCTTAACTTATCGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49176.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis