Browse Element(s) Details


Os.49204.1.S1_x_at

Description gb:AK066272.1
DB_XREF= gi:32976290
TID=Os.49204.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49204 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013059F18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013059F18, full insert sequence.
FL= gb:AK066272.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g294007/11F-box domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g29360NANA8+17874268..17879037retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os08g29370Os.14368.1.S1_at11/118+17887239..17891069Peptidyl-prolyl cis-trans isomerase, chloroplast precursor, putative, expressed
LOC_Os08g29380NANA8+17892008..17892280hypothetical protein
LOC_Os08g29390NANA8+17893326..17894109hypothetical protein
LOC_Os08g29400OsAffx.5976.1.S1_at11/118+17894936..17898059F-box domain containing protein, expressed
LOC_Os08g29400Os.49204.1.S1_x_at7/118+17894936..17898059F-box domain containing protein, expressed
LOC_Os08g29410Os.14919.1.S1_at2/118+17899819..17901030hypothetical protein
LOC_Os08g29420Os.52731.1.S1_at1/118+17903439..17906747retrotransposon protein, putative, unclassified
LOC_Os08g29420OsAffx.22699.1.S1_x_at1/118+17903439..17906747retrotransposon protein, putative, unclassified
LOC_Os08g29430OsAffx.16451.1.A1_x_at1/118+17910102..17913502retrotransposon protein, putative, unclassified
LOC_Os08g29440NANA8+17916310..17917137hypothetical protein
LOC_Os08g29450OsAffx.31867.1.S1_x_at1/118+17921691..17922134hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49204.1.S1_x_at--253--7731Chr08:17896193..17896217 (25 bp)
GGTGAGTTTGAACCGGTGCTCCCAA
LOC_Os08g29400
Os.49204.1.S1_x_at--1030--2071Chr08:17896222..17896246 (25 bp)
ACATTGCGATGGCTTGGTGCTGCTC
LOC_Os08g29400
Os.49204.1.S1_x_at--385--2891Chr08:17896285..17896309 (25 bp)
AAGGGATGTCCTTGCACTGCCAGAG
LOC_Os08g29400
Os.49204.1.S1_x_at--337--3271Chr08:17896336..17896360 (25 bp)
CAACTTGGGCTTTGATGCTTCGACT
LOC_Os08g29400
Os.49204.1.S1_x_at--613--6411Chr08:17896380..17896404 (25 bp)
GATCTTTTTATCGTTCCCGTGAATA
LOC_Os08g29400
Os.49204.1.S1_x_at--362--5191Chr08:17896424..17896448 (25 bp)
GCAATGGGTTTCGAGGTCTTCACTA
LOC_Os08g29400
Os.49204.1.S1_x_at--480--4191Chr08:17896493..17896517 (25 bp)
CCCTACCCTGTGCTGTATTCAAAGA
LOC_Os08g29400
Os.49204.1.S1_x_at--347--6831NONE
GTTTCAGCCTTCAAGACGGAACATT
NONE
Os.49204.1.S1_x_at--1061--8151NONE
GGAACATTTGGTGTCACTCCGTTGC
NONE
Os.49204.1.S1_x_at--859--1991NONE
ACTCCGTTGCTTACTTGACACGGTA
NONE
Os.49204.1.S1_x_at--546--5411NONE
GACACGGTACCCTCAAGTTTGAAGA
NONE
Target Sequence 
GGTGAGTTTGAACCGGTGCTCCCAATGGCACATTGCGATGGCTTGGTGCTGCTCCCCACTAAGACCAANGCCTACGTCTT
CAATNCGGNCACAAGGGATGTCCTTGCACTGCCAGAGAGCAATCGCAACATGAGGCANNGTGACAACTTGGGCTTTGATG
CTTCGACTGGCAAATATAAGGTTGCACGATCTTTTTATCGTTCCCGTGAATATAATCCCATGGGGATCGNTGCAATGGGT
TTCGAGGTCTTCACTATTAATGGAGAAGAAAGCTGTTGGAGAGAAACTTTGGTGGATCCACCCTACCCTGTGCTGTATTC
AAAGATTGTTACACACTGCAAGGGGTGTCTATTCTATTACATTGATAAGNAGAATCAGCAAAATCCCCCACAGGCTCTGC
TCCGTTTCAGCCTTCAAGACGGAACATTTGGTGTCACTCCGTTGCTTACTTGACACGGTACCCTCAAGTTTGAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49204.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis