Browse Element(s) Details


Os.49214.1.S1_at

Description gb:AK099115.1
DB_XREF= gi:32984324
TID=Os.49214.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49214 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023038C07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023038C07, full insert sequence.
FL= gb:AK099115.1 gb:AK064084.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0705011/11FHA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g07000OsAffx.30851.1.S1_at11/1111+3478324..3479769hypothetical protein
LOC_Os11g07010OsAffx.18714.1.S1_at9/1111+3480295..3481145hypothetical protein
LOC_Os11g07020Os.18335.3.S1_x_at11/1111+3484456..3487557Fructose-bisphosphate aldolase, chloroplast precursor, putative, expressed
LOC_Os11g07020Os.7988.1.S1_s_at11/1111+3484456..3487557Fructose-bisphosphate aldolase, chloroplast precursor, putative, expressed
LOC_Os11g07030Os.24073.1.S1_at11/1111+3488365..3490311expressed protein
LOC_Os11g07040Os.5879.1.S1_at11/1111+3491121..3495877Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os11g07050Os.49214.1.S1_at11/1111+3502731..3508683FHA domain containing protein, expressed
LOC_Os11g07060Os.49831.1.S1_at11/1111+3513705..3518114Leucine Rich Repeat family protein, expressed
LOC_Os11g07070OsAffx.18715.1.S1_at11/1111+3519331..3520063hypothetical protein
LOC_Os11g07080OsAffx.8572.1.S1_s_at11/1111+3523164..3526481transposon protein, putative, Mutator sub-class
LOC_Os11g07080OsAffx.8572.1.S1_at9/1111+3523164..3526481transposon protein, putative, Mutator sub-class
LOC_Os11g07090OsAffx.30852.1.S1_at11/1111+3528149..3529750Pectinesterase family protein, expressed
LOC_Os11g07100OsAffx.30853.1.S1_at11/1111+3531469..3532103hypothetical protein
LOC_Os11g07110OsAffx.18716.1.S1_at11/1111+3532785..3536087Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49214.1.S1_at--577--1431Chr11:3503418..3503442 (25 bp)
AGAACATCGTCATCCTGTCCAACAG
LOC_Os11g07050
Os.49214.1.S1_at--1144--7251Chr11:3503132..3503156 (25 bp)
GTGCCTGGACGAGACTACCCTGGAG
LOC_Os11g07050
Os.49214.1.S1_at--220--991Chr11:3503074..3503098 (25 bp)
AGGAGGATCCCAAGGCCCATGGAGC
LOC_Os11g07050
Os.49214.1.S1_at--904--5391Chr11:3503036..3503060 (25 bp)
GAAGCTGATCCTGCTGCACAATTCT
LOC_Os11g07050
Os.49214.1.S1_at--667--3131Chr11:3503017..3503041 (25 bp)
AATTCTCACTATGGGCAGGCGACGA
LOC_Os11g07050
Os.49214.1.S1_at--1042--5451Chr11:3502994..3503018 (25 bp)
GAACTTCGTCGAGAATCGGCCATTG
LOC_Os11g07050
Os.49214.1.S1_at--566--9211Chr11:3502967..3502991 (25 bp)
TCCAATGGCCTCGTGGTGAACTGAC
LOC_Os11g07050
Os.49214.1.S1_at--393--3611Chr11:3502929..3502953 (25 bp)
CATTGGGCTCAGTTAGGCCTTGTGT
LOC_Os11g07050
Os.49214.1.S1_at--231--4451Chr11:3502913..3502937 (25 bp)
GCCTTGTGTGCCTTTGTATATAGAT
LOC_Os11g07050
Os.49214.1.S1_at--32--1171Chr11:3502854..3502878 (25 bp)
AGTAACACCGCTGGACTTGTGAGGT
LOC_Os11g07050
Os.49214.1.S1_at--974--10371Chr11:3502826..3502850 (25 bp)
TTTTGAGGGCGGTGGCTACATTTCT
LOC_Os11g07050
Target Sequence 
AGAACATCGTCATCCTGTCCAACAGCGTCACGCTTAAGATCAAAGCTATGGCAGAGGGATTCCCTTGCGAGGGAGCAAAG
GAATTCAGGGAGACCCTGGTGAACCCGTGCTCCAGCAGGTTCATGTGGGCGGCCAGCGCGCCGAGAGGTTCAGCCTGGTC
GTGCCTGGACGAGACTACCCTGGAGGAGAACTACTACAACAGCCACCATGGAGCCAGGAGGAGGATCCCAAGGCCCATGG
AGCCCGCCAAGGGCCTGAAGCTGATCCTGCTGCACAATTCTCACTATGGGCAGGCGACGAACTTCGTCGAGAATCGGCCA
TTGGCTCCAATGGCCTCGTGGTGAACTGACGATGGCACGATGCCATTGGGCTCAGTTAGGCCTTGTGTGCCTTTGTATAT
AGATATTGGATTTCTTCTTCTTCTTGGTATGTGATTAGAGTAACACCGCTGGACTTGTGAGGTGGATTTTGAGGGCGGTG
GCTACATTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49214.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis