Browse Element(s) Details


Os.49228.1.S1_at

Description gb:AK098971.1
DB_XREF= gi:32984180
TID=Os.49228.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49228 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013078O19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013078O19, full insert sequence.
FL= gb:AK062534.1 gb:AK070166.1 gb:AK098971.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3041011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g30370NANA2+18078705..18082394transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30380Os.55235.1.S1_at11/112+18086117..18087002expressed protein
LOC_Os02g30390OsAffx.23366.1.S1_at1/112+18093017..18096582transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30390OsAffx.23366.2.S1_s_at1/112+18093017..18096582transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30400Os.46314.3.S1_at3/112+18099911..18102676transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30400OsAffx.8264.1.S1_at1/112+18099911..18102676transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g30410Os.49228.1.S1_at11/112+18104577..18108083expressed protein
LOC_Os02g30410Os.56237.1.S1_at11/112+18104577..18108083expressed protein
LOC_Os02g30410OsAffx.2808.1.S1_s_at10/112+18104577..18108083expressed protein
LOC_Os02g30420OsAffx.19073.1.S1_x_at1/112+18114347..18115253expressed protein
LOC_Os02g30430NANA2+18122624..18123385retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g30440OsAffx.24511.1.S1_at11/112+18124910..18125295hypothetical protein
LOC_Os02g30450OsAffx.12289.1.S1_at11/112+18131447..18132199Harpin-induced protein 1 containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49228.1.S1_at--446--71Chr02:18107329..18107353 (25 bp)
ATTGCCACACGATTGGCCATCTTTA
LOC_Os02g30410
Os.49228.1.S1_at--124--1311Chr02:18107401..18107425 (25 bp)
AGATGGATTCCCACTTTAGTTGAAT
LOC_Os02g30410
Os.49228.1.S1_at--860--6211Chr02:18107437..18107461 (25 bp)
GAGGCCACATTTCCTATTTACTGGG
LOC_Os02g30410
Os.49228.1.S1_at--730--7591Chr02:18107459..18107483 (25 bp)
GGGAATTTGTTCTGTTACCTACTGA
LOC_Os02g30410
Os.49228.1.S1_at--826--10831Chr02:18107509..18107533 (25 bp)
TTGGACCATACTTTCAGGAGGACCT
LOC_Os02g30410
Os.49228.1.S1_at--444--991Chr02:18107524..18107548 (25 bp)
AGGAGGACCTCAGTATCACGCAGCT
LOC_Os02g30410
Os.49228.1.S1_at--794--7211Chr02:18107585..18107609 (25 bp)
GTCGATCTGACCTCGGGAACATTGA
LOC_Os02g30410
Os.49228.1.S1_at--453--991Chr02:18107631..18107655 (25 bp)
AGGTATCGTATCTGTTCCGGTCGAC
LOC_Os02g30410
Os.49228.1.S1_at--398--8751Chr02:18107698..18107722 (25 bp)
TGTACGTCATCGTCCAAGGGTGAAT
LOC_Os02g30410
Os.49228.1.S1_at--66--1071Chr02:18107714..18107738 (25 bp)
AGGGTGAATCTAATCTCCAGTGATA
LOC_Os02g30410
Os.49228.1.S1_at--624--471Chr02:18107836..18107860 (25 bp)
ATCTGCTTGGCATTTTATCTCATTA
LOC_Os02g30410
Target Sequence 
ATTGCCACACGATTGGCCATCTTTATAAGCAAAAGCCAAGAAATTTCACCATTTCTTGGCCAAACATTAAAAAGATGGAT
TCCCACTTTAGTTGAATAGCTTAAANGAGAGGCCACATTTCCTATTTACTGGGAATTTGTTCTGTTACCTACTGAAATTT
ACTGGCCAGGTTGGGCATGTTTGGACCATACTTTCAGGAGGACCTCAGTATCACGCAGCTCCATGGGGTTTTCTGTGAAG
ATANCTGCTTGGCTTGGTCGATCTGACCTCGGGAACATTGATGGAAATCTGATGCATTTTGGAGGTATCGTATCTGTTCC
GGTCGACCTCACACTCACAGGCAGCAATTTGCTAAACTTTGAACAGGAGTGTACGTCATCGTCCAAGGGTGAATCTAATC
TCCAGTGATATCCATAAAATAAAAATTCTCCAATTATTGGAATAGTTTGTCGAGCAAAAAGAAGGCGTGTATGTATGTGC
CGAAAGTTGAAAGGAAAAGACACCGGAATCTGCTTGGCATTTTATCTCATTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49228.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis