Browse Element(s) Details


Os.49239.1.S1_at

Description gb:AK120123.1
DB_XREF= gi:37989746
TID=Os.49239.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49239 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013026B01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013026B01, full insert sequence.
FL= gb:AK120123.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3239011/11GTP-binding protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g32350Os.47339.1.S1_x_at10/115+18779572..18784140Zinc finger, C3HC4 type family protein, expressed
LOC_Os05g32360Os.4626.1.S1_at11/115+18785338..18789028Protein kinase domain containing protein, expressed
LOC_Os05g32370Os.55790.1.S1_at11/115+18789220..18792756Helicase associated domain family protein, expressed
LOC_Os05g32380OsAffx.14915.1.S1_at11/115+18803258..18804694lipase class 3 family protein, putative
LOC_Os05g32390Os.49239.1.S1_at11/115+18808857..18817716GTP-binding protein, putative, expressed
LOC_Os05g32400NANA5+18820276..18826921retrotransposon protein, putative, unclassified
LOC_Os05g32410OsAffx.14916.1.S1_at11/115+18831511..18831999glycosyl hydrolase family 20 protein, putative
LOC_Os05g32420NANA5+18836176..18837358expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49239.1.S1_at--963--7771Chr05:18816318..18816342 (25 bp)
GGTGCATTGGTTGCCCAGGAGCAAA
LOC_Os05g32390
Os.49239.1.S1_at--864--6231Chr05:18816405..18816429 (25 bp)
GATGGCTTCAGTGCTAGTGCTGCTG
LOC_Os05g32390
Os.49239.1.S1_at--95--6691Chr05:18817022..18817046 (25 bp)
GTTGCTGGATTGTCAGCTTCTCTTT
LOC_Os05g32390
Os.49239.1.S1_at--958--10571Chr05:18817039..18817063 (25 bp)
TTCTCTTTTGACCTCTGTTTTGACA
LOC_Os05g32390
Os.49239.1.S1_at--164--2071Chr05:18817069..18817093 (25 bp)
ACTTGAAGACCTTCTTGCTCTAGCT
LOC_Os05g32390
Os.49239.1.S1_at--925--3911Chr05:18817104..18817244 (25 bp)
CTGGCGGGTTCTTTGCAATATCAAA
LOC_Os05g32390
Os.49239.1.S1_at--295--5191Chr05:18817234..18817258 (25 bp)
GCAATATCAAATTTTCCTACCCGTC
LOC_Os05g32390
Os.49239.1.S1_at--980--9951Chr05:18817251..18817275 (25 bp)
TACCCGTCGGAAACTTGCAGTAGAG
LOC_Os05g32390
Os.49239.1.S1_at--280--7951Chr05:18817332..18817356 (25 bp)
GGATATATCCCGTAGTGCTAATCAA
LOC_Os05g32390
Os.49239.1.S1_at--429--5991Chr05:18817372..18817396 (25 bp)
GAGACTGTCAGCAAACCTTATCAAG
LOC_Os05g32390
Os.49239.1.S1_at--1036--6611Chr05:18817443..18817467 (25 bp)
GTTGTCCACTGTTGAGCGTAAGCTC
LOC_Os05g32390
Target Sequence 
GGTGCATTGGTTGCCCAGGAGCAAAGGATTCCGCCAGAGAAAAATGAACTTGTCAATGAAGAAGAGAAACTCTGTGTAAA
GGCACTGGATGGCTTCAGTGCTAGTGCTGCTGCTAAGGTTTTTGAAGAAGAAATTCGTGAAGTGGCTTGGGGAACCTTTG
GAGGGCTAGGGGTTGCTGGATTGTCAGCTTCTCTTTTGACCTCTGTTTTGACAAGTACACTTGAAGACCTTCTTGCTCTA
GCTCTTTGCTCAGCTGGCGGGTTCTTTGCAATATCAAATTTTCCTACCCGTCGGAAACTTGCAGTAGAGAAGATCGGCAA
GGCTGCTGAAAAACTNTCTTNTAAAGTTGACGAAGCTATTCAGCAGGATATATCCCGTAGTGCTAATCAATTAGTCCATT
TTGTTGAGACTGTCAGCAAACCTTATCAAGATGCATGTCAGCAAAAGATAGATTGGCTGCAGGGTGTTCAGGGTGAGTTG
TCCACTGTTGAGCGTAAGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49239.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis