Browse Element(s) Details


Os.49243.2.S1_x_at

Description gb:AK119697.1
DB_XREF= gi:37989320
TID=Os.49243.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49243 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-206-D07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-157-D01, full insert sequence.
FL= gb:AK119697.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2670011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g26680NANA8+16079875..16080126hypothetical protein
LOC_Os08g26690NANA8+16095981..16100103retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g26710Os.15737.1.S1_x_at11/118+16103043..16114894expressed protein
LOC_Os08g26710OsAffx.14313.1.S1_at2/118+16103043..16114894expressed protein
LOC_Os08g26710OsAffx.21973.1.S1_at1/118+16103043..16114894expressed protein
LOC_Os08g26700Os.49243.2.S1_x_at11/118+16104619..16107419expressed protein
LOC_Os08g26700Os.49243.1.S1_x_at10/118+16104619..16107419expressed protein
LOC_Os08g26720OsAffx.5941.1.S1_at10/118+16118693..16120489hypothetical protein
LOC_Os08g26730NANA8+16127664..16128425retrotransposon, putative, centromere-specific
LOC_Os08g26740OsAffx.29372.1.S1_at11/118+16131084..16134652hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49243.2.S1_x_at--274--3991Chr08:16107221..16107245 (25 bp)
CGGGCGACAGTGACGGCCTGTTTTA
LOC_Os08g26700
Os.49243.2.S1_x_at--39--1951Chr08:16107209..16107233 (25 bp)
ACGGCCTGTTTTAGTGGCGTGCGAC
LOC_Os08g26700
Os.49243.2.S1_x_at--713--2131Chr08:16107120..16107144 (25 bp)
ACAGATCCACTAGCGGCTGCGGGAG
LOC_Os08g26700
Os.49243.2.S1_x_at--827--5693Chr06:21876829..21876849 (21 bp)
GACTAGGTTTGACAGCTGGTTTCAT
NONE
Os.49243.2.S1_x_at--775--9831Chr08:16106402..16106426 (25 bp)
TAAAGATACCACTCAGTCAAAGTCT
LOC_Os08g26700
Os.49243.2.S1_x_at--691--10312Chr08:16106352..16106376 (25 bp)
TTTCTTCATCATTGAGTTCTCCCAG
LOC_Os08g26700
Os.49243.2.S1_x_at--659--9313Chr06:21877165..21877189 (25 bp)
TCCCAGGAGCTTTTTCTACTTGAGA
NONE
Os.49243.2.S1_x_at--646--6052Chr08:16106312..16106336 (25 bp)
GAGATTTAGCTCTTGTTCTGAAACT
LOC_Os08g26700
Os.49243.2.S1_x_at--1042--5532Chr08:16106293..16106317 (25 bp)
GAAACTTTGGGATCAACAGAGCAAT
LOC_Os08g26700
Os.49243.2.S1_x_at--327--3172Chr06:21877238..21877264 (25 bp)
AATTGTTCTCGTGATTGTTGCCAGC
NONE
Os.49243.2.S1_x_at--115--6692Chr06:21877256..21877280 (25 bp)
GTTGCCAGCCTATCTAAAATACATT
NONE
Target Sequence 
CGGGCGACAGTGACGGCCTGTTTTAGTGGCGTGCGACGGGCTCGGTGGGGCCATCCACTGCCCGGATCCGGCGGCGGCGG
CCGTCCCTCGCCCGGCCCCGCACAGATCCACTAGCGGCTGCGGGAGGAGAGCCCAAGGGCAGACTCGGCGATGGCTGGTG
GACGACTGTCGTGCACCGGGTGGAGTCCGGCGGCGGGCGGCGCATCCGCTCACTTCTTTCTGCCCGCTGCCGTCATCGTG
GTTGTGCTCCACCAGCTCGCCGTGTGGCCGCCACCTTCTCCCCACACCGCCGCCGACGGACGTCGACTCCGACTCGGCCG
CCGGGGGCAAGCCCACCCAGATGGACCTCGAGGACTAGGTTTGACAGCTGGTTTCATATTTAAAGATACCACTCAGTCAA
AGTCTTGTGGTAAATATTTTGCATTTGTATTTTCTTCATCATTGAGTTCTCCCAGGAGCTTTTTCTACTTGAGATTTAGC
TCTTGTTCTGAAACTTTGGGATCAACAGAGCAATTTAAGTGGAATTGTTCTCGTGATTGTTGCCAGCCTATCTAAAATAC
ATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49243.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis