Browse Element(s) Details


Os.49254.1.S1_at

Description gb:AK111835.1
DB_XREF= gi:37988498
TID=Os.49254.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49254 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023136N03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023136N03, full insert sequence.
FL= gb:AK111835.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g4608010/11protein phosphatase 2C family protein, putative, expressed
LOC_Os02g085301/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g46040NANA2+28048051..28054207retrotransposon protein, putative, unclassified
LOC_Os02g46050NANA2+28054835..28058125retrotransposon protein, putative, unclassified
LOC_Os02g46060OsAffx.19542.3.S1_x_at3/112+28059010..28063746retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g46070NANA2+28067088..28069433transposon protein, putative, Mutator sub-class
LOC_Os02g46080Os.49254.1.S1_at10/112+28072953..28075904protein phosphatase 2C family protein, putative, expressed
LOC_Os02g46090Os.12641.1.S1_s_at11/112+28080860..28086282Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os02g46090OsAffx.12515.1.S1_at8/112+28080860..28086282Calcium-dependent protein kinase, isoform 11, putative, expressed
LOC_Os02g46100OsAffx.24747.1.S1_at11/112+28091110..28092152Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g46110OsAffx.4509.1.S1_s_at8/112+28099353..28101044hypothetical protein
LOC_Os02g46110OsAffx.24748.1.S1_at3/112+28099353..28101044hypothetical protein
LOC_Os02g46110OsAffx.4509.1.S1_x_at1/112+28099353..28101044hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0015071molecular_functionprotein phosphatase type 2C activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49254.1.S1_at--853--7691Chr02:28073340..28073364 (25 bp)
GGTTTGTCGACTCAGTAGGTCCCTC
LOC_Os02g46080
Os.49254.1.S1_at--649--6851Chr02:28073326..28073350 (25 bp)
GTAGGTCCCTCGAGAATTTCAGGAT
LOC_Os02g46080
Os.49254.1.S1_at--475--191Chr02:28073310..28073335 (25 bp)
ATTTCAGGATTCGATGCTATTCATG
LOC_Os02g46080
Os.49254.1.S1_at--1105--6331Chr02:28073298..28073323 (25 bp)
GATGCTATTCATGATATGGTGACCT
LOC_Os02g46080
Os.49254.1.S1_at--312--811Chr02:28073283..28073307 (25 bp)
ATGGTGACCTAGCAGCTCAGGTTTT
LOC_Os02g46080
Os.49254.1.S1_at--440--1512Chr02:28073273..28073297 (25 bp)
AGCAGCTCAGGTTTTGTGCCCTGCA
LOC_Os02g46080
Os.49254.1.S1_at--693--1011Chr02:28073265..28073289 (25 bp)
AGGTTTTGTGCCCTGCATTGCAGTA
LOC_Os02g46080
Os.49254.1.S1_at--971--51Chr02:28073249..28073273 (25 bp)
ATTGCAGTAGCATCAGAGTTTTACG
LOC_Os02g46080
Os.49254.1.S1_at--207--6051Chr02:28073234..28073258 (25 bp)
GAGTTTTACGCTAGAGCAAGCATTG
LOC_Os02g46080
Os.49254.1.S1_at--1043--6791NONE
GTTTTGTACATTTACCTATCTCAGG
NONE
Os.49254.1.S1_at--546--2011Chr02:28073166..28073190 (25 bp)
ACTAAAAAGTTGGTTTCATGCTTGC
LOC_Os02g46080
Target Sequence 
GGTTTGTCGACTCAGTAGGTCCCTCGAGAATTTCAGGATTCGATGCTATTCATGATATGGTGACCTAGCAGCTCAGGTTT
TGTGCCCTGCATTGCAGTAGCATCAGAGTTTTACGCTAGAGCAAGCATTGCTTTCAACTTGGTTTTTGTTTTGTACATTT
ACCTATCTCAGGTACTAAAAAGTTGGTTTCATGCTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49254.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis