Browse Element(s) Details


Os.49271.1.S1_at

Description gb:AK069495.1
DB_XREF= gi:32979519
TID=Os.49271.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49271 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023021I18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023021I18, full insert sequence.
FL= gb:AK069495.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1305011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13030Os.50391.1.S1_at11/113+7022384..7025240Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g13030Os.50391.2.S1_at11/113+7022384..7025240Lecithin:cholesterol acyltransferase family protein, expressed
LOC_Os03g13040Os.53451.1.S1_at11/113+7026026..7030376Haemolysin-III related family protein, expressed
LOC_Os03g13040Os.23343.1.A1_at11/113+7026026..7030376Haemolysin-III related family protein, expressed
LOC_Os03g13050Os.49271.1.S1_at11/113+7040885..7042416expressed protein
LOC_Os03g13060OsAffx.12838.1.S1_at11/113+7043089..7044959hypothetical protein
LOC_Os03g13070NANA3+7045664..7046544Pathogenesis-related protein 5 precursor, putative
LOC_Os03g13080OsAffx.3219.1.S1_at11/113+7047746..7049620Protein kinase domain containing protein
LOC_Os03g13089NANA3+7051970..7052332NA
LOC_Os03g13100Os.26893.1.S1_at11/113+7053797..7058150IBR domain containing protein, expressed
LOC_Os03g13110OsAffx.31816.1.S1_at3/113+7058666..7061399transposon protein, putative, Mariner sub-class
LOC_Os03g13120Os.53257.1.S1_at5/113+7061831..7063710hypothetical protein
LOC_Os03g13130Os.53391.1.S1_at11/113+7067416..7071607ternary complex factor MIP1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49271.1.S1_at--823--7611Chr03:7041916..7041940 (25 bp)
GGGACGTCATGGAGCCCGTCTGCTT
LOC_Os03g13050
Os.49271.1.S1_at--177--9931Chr03:7041942..7041966 (25 bp)
TACGTCACGTCGCTCTACTTCATGT
LOC_Os03g13050
Os.49271.1.S1_at--810--2051Chr03:7041958..7041982 (25 bp)
ACTTCATGTCCGGATACGCCTTCTT
LOC_Os03g13050
Os.49271.1.S1_at--621--4611Chr03:7042141..7042165 (25 bp)
GCGACGCCATCGTGTTGAGGCAGCA
LOC_Os03g13050
Os.49271.1.S1_at--141--9691Chr03:7042171..7042195 (25 bp)
TCACGCACGTTCATTAGCAGCAGCA
LOC_Os03g13050
Os.49271.1.S1_at--53--3731Chr03:7042224..7042248 (25 bp)
CTAATTAGGTGTGACGTCGAGCGCG
LOC_Os03g13050
Os.49271.1.S1_at--1123--4071Chr03:7042241..7042265 (25 bp)
CGAGCGCGTGCGTAGTTGCCAGCTA
LOC_Os03g13050
Os.49271.1.S1_at--690--7071Chr03:7042277..7042301 (25 bp)
GTAATACTGTACTCCACGTAGTTTG
LOC_Os03g13050
Os.49271.1.S1_at--15--2011Chr03:7042320..7042344 (25 bp)
ACTCGGGTGAGTCCATGATGTCCAG
LOC_Os03g13050
Os.49271.1.S1_at--126--1151Chr03:7042329..7042353 (25 bp)
AGTCCATGATGTCCAGCTGTACCAG
LOC_Os03g13050
Os.49271.1.S1_at--290--3411Chr03:7042351..7042375 (25 bp)
CAGCAGCCATTTATTCGGTCAGAAA
LOC_Os03g13050
Target Sequence 
GGGACGTCATGGAGCCCGTCTGCTTCTACGTCACGTCGCTCTACTTCATGTCCGGATACGCCTTCTTCATGCGCACCTCC
ACGGAGCCGTCCTTCGAGGGCTTCTACCGCAGCCGNCTCGCGTCCAGGCAGCGACGCCTCATGCGGGCGCGCAGCTTCGA
CGTCGCCCGGTACGAGGCGCTGAAGGAGCAGGTGGGAGGAGGAGCACGGTACGGNGTCGCGGCGCGCGACGCCATCGTGT
TGAGGCAGCAGNACGTCACGCACGTTCATTAGCAGCAGCAGCAGGNTGTTNTNTNTNTNNNNNTGGTGTGGCTAATTAGG
TGTGACGTCGAGCGCGTGCGTAGTTGCCAGCTAGGAGTAGTACAGTAATACTGTACTCCACGTAGTTTGAGACGTGGACG
ATCCGGGACTCGGGTGAGTCCATGATGTCCAGCTGTACCAGCAGCCATTTATTCGGTCAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49271.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis