Browse Element(s) Details


Os.49291.1.S1_at

Description gb:AK058343.1
DB_XREF= gi:32968361
TID=Os.49291.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49291 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-014-D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-014-D10, full insert sequence.
FL= gb:AK058343.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g395603/11retrotransposon protein, putative, LINE subclass
LOC_Os11g387602/11retrotransposon protein, putative, LINE subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39500OsAffx.22699.1.S1_x_at2/113+21891825..21896428retrotransposon protein, putative, unclassified
LOC_Os03g39510OsAffx.25437.1.S1_at11/113+21898927..21899253hypothetical protein
LOC_Os03g39520OsAffx.3446.1.S1_at11/113+21905101..21907689pentatricopeptide, putative
LOC_Os03g39530NANA3+21909742..21911084hypothetical protein
LOC_Os03g39540OsAffx.25438.1.S1_at11/113+21914560..21915117Cytochrome P450 71D8, putative
LOC_Os03g39550OsAffx.3447.1.S1_at11/113+21917842..21918595hypothetical protein
LOC_Os03g39560Os.49291.1.S1_at3/113+21921301..21922242retrotransposon protein, putative, LINE subclass
LOC_Os03g39570OsAffx.27757.1.S1_at2/113+21924337..21927780transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g39570OsAffx.23366.2.S1_s_at1/113+21924337..21927780transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g39580NANA3+21929885..21933177retrotransposon protein, putative, unclassified
LOC_Os03g39590NANA3+21933805..21938237retrotransposon protein, putative, unclassified
LOC_Os03g39594Os.46314.3.S1_at3/113+21943595..21944662transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g39598OsAffx.7362.1.S1_x_at1/113+21945217..21948592transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49291.1.S1_at--465--7011Chr01:10330710..10330734 (25 bp)
GTACTAGTGAAACCTGTCTTGCGTC
NONE
Os.49291.1.S1_at--76--7151Chr01:10330725..10330749 (25 bp)
GTCTTGCGTCTATGTATCGATTCAT
NONE
Os.49291.1.S1_at--582--6511Chr01:10330743..10330767 (25 bp)
GATTCATGTGGTCTACGTACGTACT
NONE
Os.49291.1.S1_at--922--6991Chr01:10330759..10330783 (25 bp)
GTACGTACTGGATCTCAACTACTTG
NONE
Os.49291.1.S1_at--3--8771Chr01:10330787..10330811 (25 bp)
TGTATCGGTTCATGATCAGGCCTCT
NONE
Os.49291.1.S1_at--910--9451Chr01:10330809..10330833 (25 bp)
TCTGGGCTACTTCACGTCATAAGGG
NONE
Os.49291.1.S1_at--941--3071Chr01:10330850..10330874 (25 bp)
AATCAGTGTTGAGTGCTTTGCCGAC
NONE
Os.49291.1.S1_at--165--4554Chr11:22527430..22527454 (25 bp)
GCCCTTCAAGCTCCCAAATGGGTAA
LOC_Os11g38760
Os.49291.1.S1_at--1028--6775Chr11:22527470..22527494 (25 bp)
GTTACCGCAGATCCTTCTTATGGAA
LOC_Os11g38760
Os.49291.1.S1_at--184--6233Chr03:21922049..21922073 (25 bp)
GAGGCCTTGGAATTCCAGACCTTGA
LOC_Os03g39560
Os.49291.1.S1_at--826--172Chr03:13792525..13792585 (25 bp)
ATTTTTTCGCGCTCTAAGACTACGG
NONE
Target Sequence 
GTACTAGTGAAACCTGTCTTGCGTCTATGTATCGATTCATGTGGTCTACGTACGTACTGGATCTCAACTACTTGATCTGT
ATCGGTTCATGATCAGGCCTCTGGGCTACTTCACGTCATAAGGGAGAAGAATTCTTGTGCAATCAGTGTTGAGTGCTTTG
CCGACCTTTCATCTAACTGCCCTTCAAGCTCCCAAATGGGTAATCAGTAGAATAGATCGTTACCGCAGATCCTTCTTATG
GAAGGGAGAAGACCCTGACAAAACAAATCCGGGAAGTAGCTTGGTAAATTGGGTACAGTCTGTAGACCAAAAATTTTAGG
AGGCCTTGGAATTCCAGACCTTGAGAAATTTTTTCGCGCTCTAAGACTACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49291.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis