Browse Element(s) Details


OsAffx.3447.1.S1_at

Description tigr:9631.m03799
TID=OsAffx.3447.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3955011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39500OsAffx.22699.1.S1_x_at2/113+21891825..21896428retrotransposon protein, putative, unclassified
LOC_Os03g39510OsAffx.25437.1.S1_at11/113+21898927..21899253hypothetical protein
LOC_Os03g39520OsAffx.3446.1.S1_at11/113+21905101..21907689pentatricopeptide, putative
LOC_Os03g39530NANA3+21909742..21911084hypothetical protein
LOC_Os03g39540OsAffx.25438.1.S1_at11/113+21914560..21915117Cytochrome P450 71D8, putative
LOC_Os03g39550OsAffx.3447.1.S1_at11/113+21917842..21918595hypothetical protein
LOC_Os03g39560Os.49291.1.S1_at3/113+21921301..21922242retrotransposon protein, putative, LINE subclass
LOC_Os03g39570OsAffx.27757.1.S1_at2/113+21924337..21927780transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g39570OsAffx.23366.2.S1_s_at1/113+21924337..21927780transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g39580NANA3+21929885..21933177retrotransposon protein, putative, unclassified
LOC_Os03g39590NANA3+21933805..21938237retrotransposon protein, putative, unclassified
LOC_Os03g39594Os.46314.3.S1_at3/113+21943595..21944662transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3447.1.S1_at--201--5811Chr03:21918493..21918517 (25 bp)
GACGCCGCCATGAGCACTGCCGTGA
LOC_Os03g39550
OsAffx.3447.1.S1_at--22--8911Chr03:21918483..21918507 (25 bp)
TGAGCACTGCCGTGAGCGCCAACTT
LOC_Os03g39550
OsAffx.3447.1.S1_at--946--9111Chr03:21918161..21918185 (25 bp)
TGCTGAGCGCCAAGCTGTACGACAT
LOC_Os03g39550
OsAffx.3447.1.S1_at--393--8751Chr03:21918146..21918170 (25 bp)
TGTACGACATGGTGGGCCGCGCCAT
LOC_Os03g39550
OsAffx.3447.1.S1_at--534--4431Chr03:21918126..21918150 (25 bp)
GCCATCGAGCAACACCAGGAGCATG
LOC_Os03g39550
OsAffx.3447.1.S1_at--1004--5091Chr03:21918089..21918113 (25 bp)
GCACGCATGGCAATAGGGAGTGCCT
LOC_Os03g39550
OsAffx.3447.1.S1_at--423--1071Chr03:21918075..21918099 (25 bp)
AGGGAGTGCCTGTTGAGTACTCTTC
LOC_Os03g39550
OsAffx.3447.1.S1_at--596--8891Chr03:21918062..21918086 (25 bp)
TGAGTACTCTTCTGAGGATCCCGAA
LOC_Os03g39550
OsAffx.3447.1.S1_at--397--8891Chr03:21918050..21918074 (25 bp)
TGAGGATCCCGAAGGAAGGTGACAA
LOC_Os03g39550
OsAffx.3447.1.S1_at--1110--6291Chr03:21918021..21918045 (25 bp)
GATGATGGCGGCGATCTCACCATGG
LOC_Os03g39550
OsAffx.3447.1.S1_at--511--4631Chr03:21918011..21918035 (25 bp)
GCGATCTCACCATGGCAAACGTCAA
LOC_Os03g39550
Target Sequence 
GACGCCGCCATGAGCACTGCCGTGAGCGCCAACTTCGGCGACGGGGCCGATGACCGACCTGGCGCTGCGCGCCATCATGG
GGGAGCACTGCACGCCGTCCGGACCGCCGCCACATCCGCGGTGCGCGACGTGAAGCTGCTGAGCGCCAAGCTGTACGACA
TGGTGGGCCGCGCCATCGAGCAACACCAGGAGCATGCCGACGACGGCGGCACGCATGGCAATAGGGAGTGCCTGTTGAGT
ACTCTTCTGAGGATCCCGAAGGAAGGTGACAACAACGATGATGGCGGCGATCTCACCATGGCAAACGTCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3447.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis