Browse Element(s) Details


OsAffx.25438.1.S1_at

Description tigr:9631.m03798
TID=OsAffx.25438.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3954011/11Cytochrome P450 71D8, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39500OsAffx.22699.1.S1_x_at2/113+21891825..21896428retrotransposon protein, putative, unclassified
LOC_Os03g39510OsAffx.25437.1.S1_at11/113+21898927..21899253hypothetical protein
LOC_Os03g39520OsAffx.3446.1.S1_at11/113+21905101..21907689pentatricopeptide, putative
LOC_Os03g39530NANA3+21909742..21911084hypothetical protein
LOC_Os03g39540OsAffx.25438.1.S1_at11/113+21914560..21915117Cytochrome P450 71D8, putative
LOC_Os03g39550OsAffx.3447.1.S1_at11/113+21917842..21918595hypothetical protein
LOC_Os03g39560Os.49291.1.S1_at3/113+21921301..21922242retrotransposon protein, putative, LINE subclass
LOC_Os03g39570OsAffx.27757.1.S1_at2/113+21924337..21927780transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g39570OsAffx.23366.2.S1_s_at1/113+21924337..21927780transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g39580NANA3+21929885..21933177retrotransposon protein, putative, unclassified
LOC_Os03g39590NANA3+21933805..21938237retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25438.1.S1_at--869--2631Chr03:21914974..21914998 (25 bp)
AACCATGAGGTTGCACCCTCTAGCA
LOC_Os03g39540
OsAffx.25438.1.S1_at--838--3711Chr03:21914955..21914979 (25 bp)
CTAGCATCTCTACTTGTCCCAAGAA
LOC_Os03g39540
OsAffx.25438.1.S1_at--707--7171Chr03:21914940..21914964 (25 bp)
GTCCCAAGAAAGTGTCAAGAGTCAT
LOC_Os03g39540
OsAffx.25438.1.S1_at--92--1351Chr03:21914923..21914947 (25 bp)
AGAGTCATGTAAAATCCTTGGATAT
LOC_Os03g39540
OsAffx.25438.1.S1_at--136--7631Chr03:21914887..21914911 (25 bp)
GGGAACAATCTTGATCGTGAATGTA
LOC_Os03g39540
OsAffx.25438.1.S1_at--318--2991Chr03:21914868..21914892 (25 bp)
AATGTATGGACTATTGGCAGAGACC
LOC_Os03g39540
OsAffx.25438.1.S1_at--306--691Chr03:21914831..21914855 (25 bp)
ATGACGCAGAAGTGTTTATACCAGA
LOC_Os03g39540
OsAffx.25438.1.S1_at--257--311Chr03:21914814..21914838 (25 bp)
ATACCAGAGCGTTTCGAGGACACAA
LOC_Os03g39540
OsAffx.25438.1.S1_at--254--7291Chr03:21914731..21914755 (25 bp)
GTGCCTAGGCATGACATTTGCACAT
LOC_Os03g39540
OsAffx.25438.1.S1_at--872--451Chr03:21914657..21914681 (25 bp)
ATCTCCCTCACGGTGTAACACATGA
LOC_Os03g39540
OsAffx.25438.1.S1_at--765--1471Chr03:21914615..21914639 (25 bp)
AGCAATTTAGCGTGACCGTCTCTAG
LOC_Os03g39540
Target Sequence 
AACCATGAGGTTGCACCCTCTAGCATCTCTACTTGTCCCAAGAAAGTGTCAAGAGTCATGTAAAATCCTTGGATATGATA
TTCCAAAGGGAACAATCTTGATCGTGAATGTATGGACTATTGGCAGAGACCATAGATATTGGGATGACGCAGAAGTGTTT
ATACCAGAGCGTTTCGAGGACACAACCATTGATTTTAAGGGTACACATTTTGAGTTTATATCATTTGGGGCAGGACGGAG
GATGTGCCTAGGCATGACATTTGCACATGCAACAATAGAGTTGGCTCTCACTGCTCTTCTATACCACTTTGATTGGCATC
TCCCTCACGGTGTAACACATGATGGGATGGACATGGAGGAGCAATTTAGCGTGACCGTCTCTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25438.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis