Browse Element(s) Details


Os.49306.1.S1_at

Description gb:AK070377.1
DB_XREF= gi:32980401
TID=Os.49306.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49306 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023054H24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023054H24, full insert sequence.
FL= gb:AK070377.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g2666011/11oligoribonuclease, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g26614OsAffx.12208.1.S1_at10/112+15615138..15624114retrotransposon protein, putative, unclassified
LOC_Os02g26614Os.8966.1.S1_at10/112+15615138..15624114retrotransposon protein, putative, unclassified
LOC_Os02g26614OsAffx.18542.1.S1_x_at2/112+15615138..15624114retrotransposon protein, putative, unclassified
LOC_Os02g26614OsAffx.30422.1.S1_x_at1/112+15615138..15624114retrotransposon protein, putative, unclassified
LOC_Os02g26630NANA2+15628885..15632059transposon protein, putative, Mutator sub-class
LOC_Os02g26640OsAffx.12209.1.S1_at11/112+15632827..15633604hypothetical protein
LOC_Os02g26650Os.14546.1.S1_at11/112+15635410..156415067-dehydrocholesterol reductase, putative, expressed
LOC_Os02g26660Os.49306.1.S1_at11/112+15644370..15649639oligoribonuclease, putative, expressed
LOC_Os02g26670OsAffx.24437.1.S1_at11/112+15653602..15654807expressed protein
LOC_Os02g26680NANA2+15662333..15662665hypothetical protein
LOC_Os02g26690OsAffx.19542.3.S1_x_at4/112+15664361..15669683retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g26700Os.10784.1.S1_at10/112+15670356..15673681ChaC-like protein, expressed
LOC_Os02g26700Os.39083.1.A1_x_at1/112+15670356..15673681ChaC-like protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005622cellular_componentintracellular
GO:0004527molecular_functionexonuclease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49306.1.S1_at--475--1451Chr02:15646361..15646385 (25 bp)
AGAAGCATGTTGGTTCATCTCCTCC
LOC_Os02g26660
Os.49306.1.S1_at--158--6751Chr02:15646349..15646373 (25 bp)
GTTCATCTCCTCCATTAATAGCTGG
LOC_Os02g26660
Os.49306.1.S1_at--633--4331Chr02:15645946..15645970 (25 bp)
CCATCTTCTCTCACGTTATTGTTGA
LOC_Os02g26660
Os.49306.1.S1_at--972--2951Chr02:15645909..15645933 (25 bp)
AATGGCTTTGTGCATCAGATGGTAC
LOC_Os02g26660
Os.49306.1.S1_at--176--5571Chr02:15644718..15644742 (25 bp)
GAAAGCATCGCTGAACTGAAATACT
LOC_Os02g26660
Os.49306.1.S1_at--72--5131Chr02:15644612..15644636 (25 bp)
GCAAATCGATTCACATGCTAGCCAT
LOC_Os02g26660
Os.49306.1.S1_at--196--7451Chr02:15644552..15644576 (25 bp)
GTGTCACTTTGACCTCGTATTTAAA
LOC_Os02g26660
Os.49306.1.S1_at--968--3091Chr02:15644529..15644553 (25 bp)
AATACGTGTTTTGTTTTCATGTCCA
LOC_Os02g26660
Os.49306.1.S1_at--1027--10531Chr02:15644514..15644538 (25 bp)
TTCATGTCCATTGATCAGTGCCTGG
LOC_Os02g26660
Os.49306.1.S1_at--353--3451Chr02:15644499..15644523 (25 bp)
CAGTGCCTGGATGTAAGTATGCCTA
LOC_Os02g26660
Os.49306.1.S1_at--649--6911Chr02:15644483..15644507 (25 bp)
GTATGCCTATGTTATTCACCTGTGA
LOC_Os02g26660
Target Sequence 
AGAAGCATGTTGGTTCATCTCCTCCATTAATAGCTGGGAATTCTGTTTATGTGGATTTACTATTTTTGAAGAATTATATG
CCGCAGCTTGCAGCCATCTTCTCTCACGTTATTGTTGATGTGAGCAGTATAATGGCTTTGTGCATCAGATGGTACCCCAA
AGAAAGGAAGCGAACTCCTCAAAAAGGGAAAAAACATAGGGCAATGAATGATATCAAAGAAAGCATCGCTGAACTGAAAT
ACTACGAGGACAACATTTTCAAACCTCAAAAATCTAAGCAGTAGCTACATGGATGGAGCATGGTGGGCATCTTCATGATG
GACAGCAAATCGATTCACATGCTAGCCATGATTGAAAATGGATTTTTCATATCAATATTTCCAAGTGTCACTTTGACCTC
GTATTTAAATACGTGTTTTGTTTTCATGTCCATTGATCAGTGCCTGGATGTAAGTATGCCTATGTTATTCACCTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49306.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis