Browse Element(s) Details


Os.49330.1.S1_at

Description gb:AK106652.1
DB_XREF= gi:32991861
TID=Os.49330.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49330 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-113-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-113-F11, full insert sequence.
FL= gb:AK106652.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5352010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53496NANA4+31635367..31643224NB-ARC domain containing protein, expressed
LOC_Os04g53502Os.14269.1.S1_x_at9/114+31645122..31648340expressed protein
LOC_Os04g53510Os.49169.1.S1_at10/114+31656664..31660643F-box domain containing protein, expressed
LOC_Os04g53520Os.49330.1.S1_at10/114+31661475..31675514expressed protein
LOC_Os04g53520OsAffx.10811.1.A1_at6/114+31661475..31675514expressed protein
LOC_Os04g53520Os.39289.1.S1_at1/114+31661475..31675514expressed protein
LOC_Os04g53530Os.24287.1.A1_at11/114+31676191..31681094expressed protein
LOC_Os04g53540Os.12432.1.S1_a_at11/114+31681144..31686947START domain containing protein, expressed
LOC_Os04g53540Os.57415.1.S1_x_at2/114+31681144..31686947START domain containing protein, expressed
LOC_Os04g53540Os.10246.4.S1_x_at2/114+31681144..31686947START domain containing protein, expressed
LOC_Os04g53540OsAffx.29023.1.S1_x_at2/114+31681144..31686947START domain containing protein, expressed
LOC_Os04g53544NANA4+31691189..31691506transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49330.1.S1_at--1026--10511NONE
TTCATCTTGCACGTAGAGCAGCAGT
NONE
Os.49330.1.S1_at--942--6211Chr04:31661952..31661976 (25 bp)
GAGGCGAATTCTGCACGACGGACAT
LOC_Os04g53520
Os.49330.1.S1_at--431--6411Chr04:31661907..31661931 (25 bp)
GATCACCGGCTTCAATTCTACAAAG
LOC_Os04g53520
Os.49330.1.S1_at--745--10571Chr04:31661807..31661831 (25 bp)
TTCTCTGGCAAGAACCATTTGGCGA
LOC_Os04g53520
Os.49330.1.S1_at--1028--791Chr04:31661783..31661807 (25 bp)
ATGGGCGAATGCTCTCCTATGATGA
LOC_Os04g53520
Os.49330.1.S1_at--1133--5351Chr04:31661737..31661761 (25 bp)
GAAGAGCTTTCGAGGCAGCCAGAAG
LOC_Os04g53520
Os.49330.1.S1_at--424--5511Chr04:31661700..31661724 (25 bp)
GAAAATACCCTCCTTTGTCGAGTAT
LOC_Os04g53520
Os.49330.1.S1_at--42--5451Chr04:31661666..31661690 (25 bp)
GAACCCTGCAGGCATTGTCATTTTG
LOC_Os04g53520
Os.49330.1.S1_at--811--7691Chr04:31661642..31661666 (25 bp)
GGGTACTGACACAATACATCTCAAG
LOC_Os04g53520
Os.49330.1.S1_at--1038--1131Chr04:31661616..31661640 (25 bp)
AGTCCAGATAGCGTTTCTTCAGAGG
LOC_Os04g53520
Os.49330.1.S1_at--288--5111Chr04:31661503..31661527 (25 bp)
GCACAGCAGTACAGCACAACCAAGT
LOC_Os04g53520
Target Sequence 
TTCATCTTGCACGTAGAGCAGCAGTTCGAAAGGCATGATTCGATTCTTGATGGAGAACCTACGGATTTGAGGCGAATTCT
GCACGACGGACATGCCAACCTCCAGAATGTGACGATCACCGGCTTCAATTCTACAAAGAGCATGATTGAGCTAACAACTC
ACATTCTTGAGAATGCACCATCGCTCAAGTGCATTACGCTGGATACAGCCAACTTCTCTGGCAAGAACCATTTGGCGATG
GGCGAATGCTCTCCTATGATGAGAGGAGGGATCTTGGAAGCACGAAGAGCTTTCGAGGCAGCCAGAAGACACATCGCGGG
GAAAATACCCTCCTTTGTCGAGTATAAGTTTCTGGAACCCTGCAGGCATTGTCATTTTGGGTACTGACACAATACATCTC
AAGAAGTCCAGATAGCGTTTCTTCAGAGGAGAAATTCAAGTGTAGAAATCTATATTGACGCTCAATCCTTTTTGCTTGTT
CGCAAAAAAGAAAAATCGAATGTAGAAATGTAAAAATGCACAGCAGTACAGCACAACCAAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49330.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis