Browse Element(s) Details


Os.49331.1.S1_at

Description gb:AK121125.1
DB_XREF= gi:37990748
TID=Os.49331.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49331 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023075A07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023075A07, full insert sequence.
FL= gb:AK121125.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3592011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35880Os.10164.1.S1_at11/119+20645934..20649503B-box zinc finger family protein, expressed
LOC_Os09g35890Os.23742.1.S1_at11/119+20654226..20658702kinesin motor family protein, putative, expressed
LOC_Os09g35900Os.5394.1.S1_at1/119+20659309..20659557expressed protein
LOC_Os09g35910Os.2363.1.S1_a_at11/119+20671508..20672799Homeobox domain containing protein, expressed
LOC_Os09g35920Os.49331.1.S1_at11/119+20673353..20678159expressed protein
LOC_Os09g35930OsAffx.27522.1.S1_x_at4/119+20688444..20688733hypothetical protein
LOC_Os09g35940OsAffx.6488.1.S1_at11/119+20690835..20692635Cytochrome P450 78A3, putative, expressed
LOC_Os09g35950OsAffx.19542.3.S1_x_at4/119+20696949..20701172retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49331.1.S1_at--902--6571Chr09:20673904..20673928 (25 bp)
GATTCTGATCGTCACTGTGTCTGAA
LOC_Os09g35920
Os.49331.1.S1_at--902--8731Chr09:20673871..20673895 (25 bp)
TGTAATTATGCCATGGAGCCCACAC
LOC_Os09g35920
Os.49331.1.S1_at--140--2791Chr09:20673827..20673851 (25 bp)
AAGAGACCTGATCGTTCGCCAGAGA
LOC_Os09g35920
Os.49331.1.S1_at--565--5931Chr09:20673806..20673830 (25 bp)
GAGAAAGCAACCTAATTCGTCCGGG
LOC_Os09g35920
Os.49331.1.S1_at--921--2491Chr09:20673762..20673786 (25 bp)
AACAGTGGGTGATACCATCGCCATT
LOC_Os09g35920
Os.49331.1.S1_at--1155--9811Chr09:20673542..20673566 (25 bp)
TAACATGGTGGCTGTCATTGTCCTG
LOC_Os09g35920
Os.49331.1.S1_at--1113--3891Chr09:20673520..20673544 (25 bp)
CTGGGTGGGTCTTGTCTTTGACTAA
LOC_Os09g35920
Os.49331.1.S1_at--309--9091Chr09:20673492..20673516 (25 bp)
TGCTACTGCTTGTATCCGGATTGAT
LOC_Os09g35920
Os.49331.1.S1_at--85--7931Chr09:20673475..20673499 (25 bp)
GGATTGATTACTCAGCCTTGCACTC
LOC_Os09g35920
Os.49331.1.S1_at--921--2411Chr09:20673416..20673440 (25 bp)
AAAAAATGGCCTTCTGATCTTGCAG
LOC_Os09g35920
Os.49331.1.S1_at--1140--7191Chr09:20673371..20673395 (25 bp)
GTCGTTTATCCTGTAAGCGCAGCAA
LOC_Os09g35920
Target Sequence 
GATTCTGATCGTCACTGTGTCTGAACAGTGACATGTAATTATGCCATGGAGCCCACACAACAGTTGAAGACGAAAGAAAG
AGACCTGATCGTTCGCCAGAGAAAGCAACCTAATTCGTCCGGGGTTACGTACGTGCCCAAGAAACAGTGGGTGATACCAT
CGCCATTAATTACTGTAAGTAAATAAGTTGCTTAATTGATAAGTGAAATTTTGGTTTTGGATCACCATTTTAGTTTGTGG
CCTTGTGGGTGAGCTAGCATGTACTGGATTGTTGACACGTTGGAGCTGGTCGCTGTCAGGATGGAAAAGAAGTATGCCGG
GTAAATTATTACTATCACTTCTACCTAGGATAAACGAAGGATTAACATGGTGGCTGTCATTGTCCTGGGTGGGTCTTGTC
TTTGACTAAAACTGCTACTGCTTGTATCCGGATTGATTACTCAGCCTTGCACTCTTCAGCCTTCTCACAAAATTCTAGCT
TTAGTCATAAAAAATGGCCTTCTGATCTTGCAGAAAAATGCGACTACTCATCAGTCGTTTATCCTGTAAGCGCAGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49331.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis