Browse Element(s) Details


Os.49354.1.S1_at

Description gb:AK106421.1
DB_XREF= gi:32991630
TID=Os.49354.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49354 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-103-B03, full insert sequence.
FL= gb:AK106421.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4873011/11serine/threonine-protein kinase NAK, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g48700OsAffx.28957.1.S1_at11/117+29154288..29160937expressed protein
LOC_Os07g48700OsAffx.4557.1.S1_s_at1/117+29154288..29160937expressed protein
LOC_Os07g48700OsAffx.2045.1.S1_x_at1/117+29154288..29160937expressed protein
LOC_Os07g48690Os.49951.1.S1_at11/117+29160723..29164881expressed protein
LOC_Os07g48710Os.4651.1.S1_at11/117+29169385..29170532VQ motif family protein, expressed
LOC_Os07g48720Os.52517.1.S1_at11/117+29172299..29176633RINT-1/TIP-1 family protein, expressed
LOC_Os07g48730Os.49354.1.S1_at11/117+29177968..29179798serine/threonine-protein kinase NAK, putative, expressed
LOC_Os07g48750Os.9163.1.S1_at2/117+29182003..29186422Alpha-L-arabinofuranosidase C-terminus family protein, expressed
LOC_Os07g48760OsAffx.16766.1.S1_at11/117+29188672..29192485CIPK-like protein 1, putative, expressed
LOC_Os07g48770Os.5187.1.S1_at11/117+29193380..29195770expressed protein
LOC_Os07g48780Os.51736.1.S1_at11/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48780Os.182.1.S1_at11/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48780Os.57504.1.S1_x_at6/117+29196039..29198699Calmodulin, putative, expressed
LOC_Os07g48790Os.53516.1.S1_at11/117+29200303..292028635'-AMP-activated protein kinase, beta subunit, complex-interacting region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49354.1.S1_at--1087--534Chr07:29179312..29179336 (25 bp)
ATCGCCGGAAGGTCAACCGCATCAT
LOC_Os07g48730
Os.49354.1.S1_at--355--8391Chr07:29179514..29179538 (25 bp)
GGCGCACAGGTCGAGGCCATTCCAA
LOC_Os07g48730
Os.49354.1.S1_at--109--6231Chr07:29179526..29179550 (25 bp)
GAGGCCATTCCAAGCGCTAGCGAGC
LOC_Os07g48730
Os.49354.1.S1_at--1136--3571Chr07:29179531..29179555 (25 bp)
CATTCCAAGCGCTAGCGAGCTAGCT
LOC_Os07g48730
Os.49354.1.S1_at--1061--131Chr07:29179577..29179601 (25 bp)
ATTACTTCGTCATCTCTCAATTACT
LOC_Os07g48730
Os.49354.1.S1_at--175--3191Chr07:29179594..29179618 (25 bp)
CAATTACTCCAGTATTATTTGTTTG
LOC_Os07g48730
Os.49354.1.S1_at--135--6871Chr07:29179614..29179638 (25 bp)
GTTTGTCAATTTCATGCTAGCATAG
LOC_Os07g48730
Os.49354.1.S1_at--1162--1171Chr07:29179637..29179661 (25 bp)
AGTAGCATGTGGTGTCTATACAGAC
LOC_Os07g48730
Os.49354.1.S1_at--572--511Chr07:29179668..29179692 (25 bp)
ATCGATGAACATCTAGCTACCTAGT
LOC_Os07g48730
Os.49354.1.S1_at--596--3711Chr07:29179680..29179704 (25 bp)
CTAGCTACCTAGTTTGTAATTAGTT
LOC_Os07g48730
Os.49354.1.S1_at--551--6051Chr07:29179711..29179735 (25 bp)
GAGATATATATCATTGCTGTGTGAA
LOC_Os07g48730
Target Sequence 
ATCGCCGGAAGGTCAACCGCATCATGGACACCAGGCTCGGCGGCAGCAGAACACCAAGCCATCCTCCTCGTCGACCTCGG
CGCCGGCGCACAGGTCGAGGCCATTCCAAGCGCTAGCGAGCTAGCTAGCTAGGCGTCTTGTTAATTAATTACTTCGTCAT
CTCTCAATTACTCCAGTATTATTTGTTTGTCAATTTCATGCTAGCATAGTAGCATGTGGTGTCTATACAGACAAAAGAAT
CGATGAACATCTAGCTACCTAGTTTGTAATTAGTTAGGTAGGAGATATATATCATTGCTGTGTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49354.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis