Browse Element(s) Details


Os.49359.1.S1_at

Description gb:AK059013.1
DB_XREF= gi:32969031
TID=Os.49359.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49359 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-021-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-021-A06, full insert sequence.
FL= gb:AK059013.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4111010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g41070NANA3+22780506..22781150Metal transporter Nramp2, putative
LOC_Os03g41080Os.7752.1.S1_at11/113+22782057..22787589seed maturation protein PM23, putative, expressed
LOC_Os03g41100OsAffx.25463.1.S1_at11/113+22800092..22801954G2/mitotic-specific cyclin C13-1, putative, expressed
LOC_Os03g41110Os.49359.1.S1_at10/113+22805551..22806741expressed protein
LOC_Os03g41120Os.54188.1.S1_at10/113+22811337..22816001expressed protein
LOC_Os03g41130Os.57170.1.S1_at11/113+22818103..22818679expressed protein
LOC_Os03g41140OsAffx.25464.1.S1_at11/113+22825513..22826543Transposable element protein, putative, Transposase_28

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Gene Ontology Classification
GO idTypeName
GO:0009640biological_processphotomorphogenesis
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49359.1.S1_at--635--1711Chr03:22806079..22806103 (25 bp)
ACCACAGGATGATGATGGCCGGCGC
LOC_Os03g41110
Os.49359.1.S1_at--199--8331Chr03:22805993..22806017 (25 bp)
GGCTCGGCGATCCACAAGCAGCAGC
LOC_Os03g41110
Os.49359.1.S1_at--51--8471Chr03:22805816..22805840 (25 bp)
TGGCCCGGGAGCTTCAGGTTCAGAA
LOC_Os03g41110
Os.49359.1.S1_at--864--5911Chr03:22805808..22805832 (25 bp)
GAGCTTCAGGTTCAGAACGCAGCCT
LOC_Os03g41110
Os.49359.1.S1_at--203--3491Chr03:22805762..22805786 (25 bp)
CAGGAGCCGCCATCAGAGCAGAGTA
LOC_Os03g41110
Os.49359.1.S1_at--715--1451Chr03:22805737..22805761 (25 bp)
AGAAGATAGACTTGAGCCTCAGGCT
LOC_Os03g41110
Os.49359.1.S1_at--804--2271Chr03:22805650..22805674 (25 bp)
AAATCCATGCATGTCCTAGGTGTAG
LOC_Os03g41110
Os.49359.1.S1_at--905--10031Chr03:22805628..22805652 (25 bp)
TAGAGCTAGCTCTTGTACTAATTAA
LOC_Os03g41110
Os.49359.1.S1_at--650--5851Chr03:22805600..22805624 (25 bp)
GACCAGTATATAATCATCATGTGTT
LOC_Os03g41110
Os.49359.1.S1_at--715--7431Chr03:22805580..22805604 (25 bp)
GTGTTTGATTCTTCAGTTTGATATA
LOC_Os03g41110
Os.49359.1.S1_at--295--6591Chr03:22805551..22805575 (25 bp)
GATTCCAGGAAGAGATTAGTCTGCC
NONE
Target Sequence 
ACCACAGGATGATGATGGCCGGCGCCGGCCTGCCGCTCGAGGCGCACGCCGCGTTCATGCGCGCCGCCCTCCGCGTCAAC
CCGGCGGGCTCGGCGATCCACAAGCAGCAGCAGCAGCACCAGCCGCCGCCGCCGATCACCCAGGACGCCACGGCGCCGAG
GTTCCACGACGGCGCAGCCGTGGCGGCGGCGGCGGCGGTCACGCCGTGGGCGCCCGTCGCCCCACTCGCCTACGACGAGG
TGCTCAGCTCGTCGGCGTCGTCGTGGCCCGGGAGCTTCAGGTTCAGAACGCAGCCTGAGCCTCCTCCCAGCTCGGAGCAG
GAGCCGCCATCAGAGCAGAGTAAGAAGATAGACTTGAGCCTCAGGCTGTGATGTGAGAGATTATACTAGTAGATTATGAT
AGGTGATCAATTGATCATCATCATGATATAAATCCATGCATGTCCTAGGTGTAGAGCTAGCTCTTGTACTAATTAATTTG
ACCAGTATATAATCATCATGTGTTTGATTCTTCAGTTTGATATATAATGATTCCAGGAAGAGATTAGTCTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49359.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis