Browse Element(s) Details


Os.49375.1.S1_at

Description gb:AK103572.1
DB_XREF= gi:32988781
TID=Os.49375.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.49375 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033132N13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033132N13, full insert sequence.
FL= gb:AK103572.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g4700011/11EF hand family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g46940Os.49601.1.S1_at9/116+28476209..28479889Cyanogenic beta-glucosidase precursor, putative, expressed
LOC_Os06g46950Os.7902.1.S1_at11/116+28482814..28483492EF-hand Ca2+-binding protein CCD1, putative, expressed
LOC_Os06g46960NANA6+28486836..28487644RNase H domain-containing protein, putative
LOC_Os06g46970Os.4940.1.S1_at11/116+28489033..28489686expressed protein
LOC_Os06g46980Os.56964.1.S1_at11/116+28492189..28492849expressed protein
LOC_Os06g46990Os.51830.1.S1_at11/116+28494282..28496333expressed protein
LOC_Os06g47000Os.28370.1.A1_s_at11/116+28503187..28507810EF hand family protein, expressed
LOC_Os06g47000Os.49375.1.S1_at11/116+28503187..28507810EF hand family protein, expressed
LOC_Os06g47010NANA6+28512372..28512962retrotransposon protein, putative, unclassified
LOC_Os06g47020OsAffx.15960.1.S1_at11/116+28513438..28514082ZmEBE-2 protein, putative
LOC_Os06g47030OsAffx.15961.1.S1_at11/116+28522996..28523217hypothetical protein
LOC_Os06g47040Os.53923.1.S1_at11/116+28523561..28524827expressed protein
LOC_Os06g47050OsAffx.28143.1.S1_at10/116+28525553..28528215hypothetical protein
LOC_Os06g47060OsAffx.15962.1.S1_at11/116+28530612..28532532hypothetical protein
LOC_Os06g47060OsAffx.19489.2.S1_at2/116+28530612..28532532hypothetical protein
LOC_Os06g47060OsAffx.19489.2.S1_x_at1/116+28530612..28532532hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006118biological_processelectron transport
GO:0005739cellular_componentmitochondrion
GO:0003954molecular_functionNADH dehydrogenase activity
GO:0015036molecular_functiondisulfide oxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49375.1.S1_at--1031--851Chr06:28503799..28503823 (25 bp)
ATGGCATCTCATTCTACTACTGCTC
LOC_Os06g47000
Os.49375.1.S1_at--771--10551Chr06:28503788..28503812 (25 bp)
TTCTACTACTGCTCTCTACTTCATT
LOC_Os06g47000
Os.49375.1.S1_at--668--9891Chr06:28503772..28503796 (25 bp)
TACTTCATTCACAGCCTTATCTCTT
LOC_Os06g47000
Os.49375.1.S1_at--1021--10511Chr06:28503765..28503789 (25 bp)
TTCACAGCCTTATCTCTTGCATCAT
LOC_Os06g47000
Os.49375.1.S1_at--360--10431Chr06:28503756..28503780 (25 bp)
TTATCTCTTGCATCATGCCTCTGAG
LOC_Os06g47000
Os.49375.1.S1_at--633--10731Chr06:28503749..28503773 (25 bp)
TTGCATCATGCCTCTGAGCTTACTA
LOC_Os06g47000
Os.49375.1.S1_at--913--591Chr06:28503742..28503766 (25 bp)
ATGCCTCTGAGCTTACTACAATTCG
LOC_Os06g47000
Os.49375.1.S1_at--972--4891Chr06:28503732..28503756 (25 bp)
GCTTACTACAATTCGTTTAGCTGCA
LOC_Os06g47000
Os.49375.1.S1_at--720--3131Chr06:28503723..28503747 (25 bp)
AATTCGTTTAGCTGCAATTCTACCC
LOC_Os06g47000
Os.49375.1.S1_at--20--5211Chr06:28503710..28503734 (25 bp)
GCAATTCTACCCTGAGAGTTTGTTT
LOC_Os06g47000
Os.49375.1.S1_at--434--9531Chr06:28503705..28503729 (25 bp)
TCTACCCTGAGAGTTTGTTTCTTTC
LOC_Os06g47000
Target Sequence 
ATGGCATCTCATTCTACTACTGCTCTCTACTTCATTCACAGCCTTATCTCTTGCATCATGCCTCTGAGCTTACTACAATT
CGTTTAGCTGCAATTCTACCCTGAGAGTTTGTTTCTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49375.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis