Browse Element(s) Details


Os.49399.1.S1_at

Description gb:AK073647.1
DB_XREF= gi:32983670
TID=Os.49399.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49399 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033049L09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033049L09, full insert sequence.
FL= gb:AK073647.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g3671011/11transposon protein, putative, Pong sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g36670Os.27582.1.A1_at11/111+20678376..20691220expressed protein
LOC_Os01g36670Os.27582.1.A1_a_at11/111+20678376..20691220expressed protein
LOC_Os01g36680OsAffx.19542.3.S1_x_at8/111+20692999..20697221retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g36690NANA1+20700588..20701642hypothetical protein
LOC_Os01g36700OsAffx.20858.1.S1_x_at11/111+20704640..20705397hypothetical protein
LOC_Os01g36700OsAffx.20858.4.S1_x_at8/111+20704640..20705397hypothetical protein
LOC_Os01g36710Os.49399.1.S1_at11/111+20706264..20710215transposon protein, putative, Pong sub-class
LOC_Os01g36710Os.11575.2.S1_a_at11/111+20706264..20710215transposon protein, putative, Pong sub-class
LOC_Os01g36710Os.11575.4.S1_x_at11/111+20706264..20710215transposon protein, putative, Pong sub-class
LOC_Os01g36710Os.11575.3.S1_x_at8/111+20706264..20710215transposon protein, putative, Pong sub-class
LOC_Os01g36720OsAffx.21244.1.S1_at10/111+20713042..20715241Major Facilitator Superfamily protein
LOC_Os01g36730NANA1+20717930..20721104hypothetical protein
LOC_Os01g36740Os.53927.1.S2_at8/111+20734485..20736516expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49399.1.S1_at--672--3892Chr08:8005468..8005492 (25 bp)
CTGGGTGACACCAACATTGATCTCA
NONE
Os.49399.1.S1_at--742--151Chr01:20709954..20709978 (25 bp)
ATTATGGCTTTTGCTTGAATTCGAG
LOC_Os01g36710
Os.49399.1.S1_at--124--71Chr01:20709936..20709960 (25 bp)
ATTCGAGGTTCTTTTGTCTAGGGTG
LOC_Os01g36710
Os.49399.1.S1_at--751--1091Chr01:20709906..20709930 (25 bp)
AGTGGACTGCTGATGACGCCATGCA
LOC_Os01g36710
Os.49399.1.S1_at--936--6931Chr01:20709793..20709817 (25 bp)
GTAGTAATCCGCTATGGCTTGCAAC
LOC_Os01g36710
Os.49399.1.S1_at--436--7391Chr01:20709757..20709781 (25 bp)
GTGAGTTTGCTGCACATAGCTGAGT
LOC_Os01g36710
Os.49399.1.S1_at--1062--5491Chr01:20708776..20708800 (25 bp)
GAACAGAAGCTGCACGTCTGCACCT
LOC_Os01g36710
Os.49399.1.S1_at--1005--6771Chr01:20708704..20708728 (25 bp)
GTTTATGCCAATCACGGTTCACGGA
LOC_Os01g36710
Os.49399.1.S1_at--465--7891Chr01:20708689..20708713 (25 bp)
GGTTCACGGATACTCAGAATGTCAG
LOC_Os01g36710
Os.49399.1.S1_at--1082--751Chr01:20708671..20708695 (25 bp)
ATGTCAGAAGTTGCCTCAGTTTCTC
LOC_Os01g36710
Os.49399.1.S1_at--489--8511Chr01:20708629..20708653 (25 bp)
TGGACTGAATCACTGGACATTTGGG
LOC_Os01g36710
Target Sequence 
CTGGGTGACACCAACATTGATCTCACTGTTGATGACAATTAATCTTCAGGCTTGAAATTACTGAGTTTATTATGAAGTGA
AAATTATGGCTTTTGCTTGAATTCGAGGTTCTTTTGTCTAGGGTGAGCCAAGTGGACTGCTGATGACGCCATGCACATAA
GTAGTAATCCGCTATGGCTTGCAACAATTTATTTCAGTGAGTTTGCTGCACATAGCTGAGTGGAACTCACTCCAGCACCA
GGTGGTCTCCGCCTTCCTCGCTGCGGTTTACAGCGAAAACATGCTGACCTCGGGGAAGATGATGGTGAGCTGCAGCAGAC
AGAGAGCTTCTTTCTGGCCAACCTGTGCAAATTTGCCAATTCCCAGAATGAATCAATCATGATGCCATAATGCATGCTAA
CAATGAACAGAAGCTGCACGTCTGCACCTCGAAGCAGAAGCTTCACAAGTGGCATAAAGGGCAGCTGAAGCTATATGTTT
ATGCCAATCACGGTTCACGGATACTCAGAATGTCAGAAGTTGCCTCAGTTTCTCTGTTATTACATCTAACATGGACTGAA
TCACTGGACATTTGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49399.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis