Browse Element(s) Details


Os.49408.1.S1_at

Description gb:AK100722.1
DB_XREF= gi:32985931
TID=Os.49408.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49408 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023116H24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023116H24, full insert sequence.
FL= gb:AK100722.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g356609/11Protein kinase domain containing protein, expressed
LOC_Os07g356802/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g35630OsAffx.2182.1.S1_at1/117+21331886..21335913retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g35630OsAffx.828.1.S1_x_at1/117+21331886..21335913retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os07g35640OsAffx.5536.1.S1_at11/117+21344090..21345214hypothetical protein
LOC_Os07g35650Os.49803.1.S1_at2/117+21351387..21354958Protein kinase domain containing protein
LOC_Os07g35660Os.49408.1.S1_at9/117+21357959..21364861Protein kinase domain containing protein, expressed
LOC_Os07g35660Os.10719.1.S1_at1/117+21357959..21364861Protein kinase domain containing protein, expressed
LOC_Os07g35670OsAffx.5537.1.S1_at11/117+21365818..21366225hypothetical protein
LOC_Os07g35680Os.22699.1.S1_at2/117+21366421..21372956Protein kinase domain containing protein, expressed
LOC_Os07g35680Os.49408.1.S1_at2/117+21366421..21372956Protein kinase domain containing protein, expressed
LOC_Os07g35690Os.49803.1.S1_at11/117+21376396..21379535Protein kinase domain containing protein, expressed
LOC_Os07g35690Os.54931.1.S2_at1/117+21376396..21379535Protein kinase domain containing protein, expressed
LOC_Os07g35700Os.26809.1.S1_at11/117+21383073..21386575Protein kinase domain containing protein, expressed
LOC_Os07g35710NANA7+21387295..21388583SWIM zinc finger family protein
LOC_Os07g35720Os.15770.2.S1_at11/117+21389781..21391866expressed protein
LOC_Os07g35720Os.15770.1.S1_x_at11/117+21389781..21391866expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49408.1.S1_at--457--8072Chr07:21364194..21364218 (25 bp)
GGAGCAATCCATTGACCTCTTGAGT
LOC_Os07g35660
Os.49408.1.S1_at--660--10091Chr07:21364389..21364413 (25 bp)
TAGGCAGCCGTGCAGTGAACGTTCT
LOC_Os07g35660
Os.49408.1.S1_at--490--2692Chr07:21364418..21364442 (25 bp)
AAGCTGATCAACATCGGGCTGCTCT
LOC_Os07g35660
Os.49408.1.S1_at--745--5631Chr07:21364571..21364595 (25 bp)
GACACGGATCTCTACGAGTCGGGAG
LOC_Os07g35660
Os.49408.1.S1_at--850--7231Chr07:21364657..21364681 (25 bp)
GTCGCCGAATGAGTTGTCGCTCTCG
LOC_Os07g35660
Os.49408.1.S1_at--1042--9331Chr07:21364673..21364697 (25 bp)
TCGCTCTCGGAGCTGGAACCAAGAT
LOC_Os07g35660
Os.49408.1.S1_at--184--8931Chr07:21364730..21364754 (25 bp)
TGACCGCAGGGTTTTTCTTCAATAA
LOC_Os07g35660
Os.49408.1.S1_at--967--1451Chr07:21364759..21364783 (25 bp)
AGAATCAACACGTGTGGCCTCTGCA
LOC_Os07g35660
Os.49408.1.S1_at--83--4471Chr07:21364775..21364799 (25 bp)
GCCTCTGCACTTGTTTGTCGATAAT
LOC_Os07g35660
Os.49408.1.S1_at--781--331NONE
ATAAATGCCCTCGTTGACGGTTGGT
NONE
Os.49408.1.S1_at--86--5751NONE
GACGGTTGGTTGGAGCTCTGCATAT
NONE
Target Sequence 
GGAGCAATCCATTGACCTCTTGAGTCTTGTATGGGAGCACTGGACAACGGGGACGATCGAGGAGCTGCTGGATCCGGCGA
TAGGCAGCCGTGCAGTGAACGTTCTGCTGAAGCTGATCAACATCGGGCTGCTCTGCGTCCAGGACAACCCGGCGGACAGG
CCGGCGATGTCGGCGGTGAACGTGATGCTCAGCAGCGACACGGTCTCCCTCCAGGCCCCGTCGAGGCCAACGTTCTCCAT
TCAGGAGATGGACGGCGCCGCCGACACGGATCTCTACGAGTCGGGAGCGTACCCCCGGAGCGCGTTCCAGCCCACCGGCG
ACGGCAACACGAGAGCAGCGGCGGCGGCGTCGCCGAATGAGTTGTCGCTCTCGGAGCTGGAACCAAGATGAGCGTTTCGA
ATTTGGAGCGATTTGTGCGGATGACCGCAGGGTTTTTCTTCAATAACGAAAGAATCAACACGTGTGGCCTCTGCACTTGT
TTGTCGATAATAATAAATAAATGCCCTCGTTGACGGTTGGTTGGAGCTCTGCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49408.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis