Browse Element(s) Details


Os.4941.1.S1_at

Description gb:AK101025.1
DB_XREF= gi:32986234
TID=Os.4941.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.4941 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023150D21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023150D21, full insert sequence.
FL= gb:AK101025.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g3906010/11Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g39020NANA6+23164710..23169275retrotransposon protein, putative, unclassified
LOC_Os06g39030OsAffx.28000.1.A1_at11/116+23171472..23172146hypothetical protein
LOC_Os06g39040OsAffx.28001.1.S1_s_at11/116+23180262..23183502NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g39040OsAffx.28001.1.S1_at11/116+23180262..23183502NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os06g39050Os.54909.1.S1_at11/116+23184075..23185284Syntaxin 125, putative, expressed
LOC_Os06g39060Os.4941.1.S1_at10/116+23186197..23187970Glucan endo-1,3-beta-glucosidase 5 precursor, putative, expressed
LOC_Os06g39070NANA6+23195393..23196850UDP-glucoronosyl and UDP-glucosyl transferase family protein
LOC_Os06g39080NANA6+23203563..23205056UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os06g39090OsAffx.24317.5.S1_x_at11/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090OsAffx.24317.5.S1_at10/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090OsAffx.24317.3.S1_at2/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090Os.55262.1.S1_x_at2/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090OsAffx.24317.6.S1_x_at2/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090OsAffx.27015.2.S1_x_at2/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090OsAffx.31512.1.S1_x_at1/116+23205641..23215431transposon protein, putative, unclassified
LOC_Os06g39090Os.49703.1.S1_at1/116+23205641..23215431transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4941.1.S1_at--655--4651Chr06:23186692..23186716 (25 bp)
GCGTCGAGTACCTCCCGAAGCAGTG
LOC_Os06g39060
Os.4941.1.S1_at--550--4191Chr06:23186679..23186703 (25 bp)
CCCGAAGCAGTGGTGCGTGTTCGAC
LOC_Os06g39060
Os.4941.1.S1_at--544--2191Chr06:23186641..23186665 (25 bp)
ACAAGTCCAAGCTCCCCGGGAACAT
LOC_Os06g39060
Os.4941.1.S1_at--58--7631Chr06:23186624..23186648 (25 bp)
GGGAACATCCAGTACGCGTGCGCCA
LOC_Os06g39060
Os.4941.1.S1_at--1058--4631Chr06:23186426..23186450 (25 bp)
GCGTTCCCGATCCAGATCATCAGCG
LOC_Os06g39060
Os.4941.1.S1_at--1064--4031Chr06:23186359..23186383 (25 bp)
CGTTGCTGGCATTGTTGATGGTGCT
LOC_Os06g39060
Os.4941.1.S1_at--813--7811Chr06:23186270..23186294 (25 bp)
GGTCTATGCGTGAATTGAATTGTCC
LOC_Os06g39060
Os.4941.1.S1_at--493--3171Chr06:23186253..23186277 (25 bp)
AATTGTCCATTTTTCGCAGCGTTCA
LOC_Os06g39060
Os.4941.1.S1_at--254--4131Chr06:23186239..23186263 (25 bp)
CGCAGCGTTCAAATGTGTTGTGACA
LOC_Os06g39060
Os.4941.1.S1_at--729--10271Chr06:23186214..23186238 (25 bp)
TTTGCAAATTCTTCACGCCGGATGC
LOC_Os06g39060
Os.4941.1.S1_at--817--4251Chr06:23186197..23186221 (25 bp)
CCGGATGCATCCTTAATTTTCTCTT
NONE
Target Sequence 
GCGTCGAGTACCTCCCGAAGCAGTGGTGCGTGTTCGACGACGGGGCCGAGGACAAGTCCAAGCTCCCCGGGAACATCCAG
TACGCGTGCGCCAGCGGCGACTGCANGGCGCTCGGCTACGGGTGCTCNTGCAACGGCCTCGNCGAGAAGAGCAANCATNT
CCTACGCCTTCAACATGTACTTCCANANTGCAGGACCAGGACGTGCGCGCCTGCGACTTCGNCGGCCTCGCCAAGATCNC
CACCAAGAACGCCTCCGCGCGCGGCTGCGCGTTCCCGATCCAGATCATCAGCGCCGCCGCGCCGGCCGTCGCCGGCNTCG
GCTTATCCGCGGCGGCGTTGCTGGCATTGTTGATGGTGCTGGTGTGAGCATACCGTGTNANACGGGTGGGTGGGTGCGTG
CGTGGCGTACATGTAGTGAGAGTGGGTCTATGCGTGAATTGAATTGTCCATTTTTCGCAGCGTTCAAATGTGTTGTGACA
TTTGCAAATTCTTCACGCCGGATGCATCCTTAATTTTCTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4941.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis