Browse Element(s) Details


Os.49423.1.S1_at

Description gb:AK058576.1
DB_XREF= gi:32968594
TID=Os.49423.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49423 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-017-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-017-F02, full insert sequence.
FL= gb:AK058576.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g0555611/11Signal recognition particle 54 kDa protein, chloroplast precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g05540Os.21289.1.S1_at11/1111+2496341..2501137rac GTPase activating protein 1, putative, expressed
LOC_Os11g05550Os.55491.1.S1_at11/1111+2502845..2504306expressed protein
LOC_Os11g05550Os.51098.1.S1_x_at1/1111+2502845..2504306expressed protein
LOC_Os11g05556Os.49423.1.S1_at11/1111+2513385..2517848Signal recognition particle 54 kDa protein, chloroplast precursor, putative, expressed
LOC_Os11g05562Os.9376.1.S1_at10/1111+2518095..252404540S ribosomal protein S25, putative, expressed
LOC_Os11g05562OsAffx.29659.1.S1_at9/1111+2518095..252404540S ribosomal protein S25, putative, expressed
LOC_Os11g05570Os.54312.1.S1_at11/1111+2525648..2528553ribonuclease HI large subunit, putative, expressed
LOC_Os11g05580OsAffx.18690.1.S1_at11/1111+2530443..2531819hypothetical protein
LOC_Os11g05590OsAffx.7006.1.S1_at11/1111+2532826..2534187hypothetical protein
LOC_Os11g05600Os.53499.1.S1_at11/1111+2535682..2538894expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006605biological_processprotein targeting
GO:0006617biological_processSRP-dependent cotranslational protein targeting to membrane, signal sequence recognition
GO:0045038biological_processprotein import into chloroplast thylakoid membrane
GO:0005737cellular_componentcytoplasm
GO:0005786cellular_componentsignal recognition particle (sensu Eukaryota)
GO:0009534cellular_componentthylakoid (sensu Viridiplantae)
GO:0009570cellular_componentchloroplast stroma
GO:0003729molecular_functionmRNA binding
GO:0005048molecular_functionsignal sequence binding
GO:0005525molecular_functionGTP binding
GO:0008312molecular_function7S RNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49423.1.S1_at--288--11Chr11:2517048..2517190 (25 bp)
AAAAACGAACGACAGGTGAGCCAAT
LOC_Os11g05556
Os.49423.1.S1_at--161--8931Chr11:2517182..2517206 (25 bp)
TGAGCCAATTGGTTGCGCAGCTCTT
LOC_Os11g05556
Os.49423.1.S1_at--822--1571Chr11:2517200..2517224 (25 bp)
AGCTCTTCCGAATGCGTGCTCAAAT
LOC_Os11g05556
Os.49423.1.S1_at--988--10091Chr11:2517480..2517504 (25 bp)
TATGGCAATCTGAGGCGGCGAGACC
LOC_Os11g05556
Os.49423.1.S1_at--288--1391Chr11:2517500..2517524 (25 bp)
AGACCTGGATGCAATGCGCGGTTTC
LOC_Os11g05556
Os.49423.1.S1_at--729--4671Chr11:2517517..2517541 (25 bp)
GCGGTTTCCGTCGACGATGAATGTT
LOC_Os11g05556
Os.49423.1.S1_at--30--671Chr11:2517533..2517557 (25 bp)
ATGAATGTTCATTGGCTCTTTCTGA
LOC_Os11g05556
Os.49423.1.S1_at--907--8311Chr11:2517546..2517570 (25 bp)
GGCTCTTTCTGAACCAAAGTGTTTT
LOC_Os11g05556
Os.49423.1.S1_at--877--5911Chr11:2517617..2517641 (25 bp)
GAGCTACTGGTTTGCTGTGATCACC
LOC_Os11g05556
Os.49423.1.S1_at--360--7411Chr11:2517633..2517657 (25 bp)
GTGATCACCATGTAGTTTCTGTTGT
LOC_Os11g05556
Os.49423.1.S1_at--1036--10231Chr11:2517711..2517735 (25 bp)
TTTGGCCATCAATTTAGCTCATAAG
LOC_Os11g05556
Target Sequence 
AAAAACGAACGACAGGTGAGCCAATTGGTTGCGCAGCTCTTCCGAATGCGTGCTCAAATGCAGAAAATGATGGGTGCTAT
GCAAGGGCAAGACACCCCTGATATGGAAGGCCTCATGGATTCCATCAAGGCAGAAGAGCAGGCTGCCGCTGGTACTGGAA
AGCGAAGGAGAAAGTATGGCAATCTGAGGCGGCGAGACCTGGATGCAATGCGCGGTTTCCGTCGACGATGAATGTTCATT
GGCTCTTTCTGAACCAAAGTGTTTTGATGCCAGTTACATGTATAGGAAGCGAGAATTTGGATGCTTTTGGGGAGCTACTG
GTTTGCTGTGATCACCATGTAGTTTCTGTTGTAATTTTTTTCTTTTTTTGAAAAGACGTACTAGTATATCGGTATATGTT
GTATTTTTGGCCATCAATTTAGCTCATAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49423.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis