Browse Element(s) Details


Os.49456.1.S1_at

Description gb:AK071891.1
DB_XREF= gi:32981914
TID=Os.49456.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49456 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013057F24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013057F24, full insert sequence.
FL= gb:AK064227.1 gb:AK071891.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5548010/11Zn-finger in ubiquitin-hydrolases and other protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g55430Os.20602.2.S1_x_at10/114+32749285..32751465hAT family dimerisation domain containing protein
LOC_Os04g55440Os.57007.1.S1_at11/114+32755775..32758622Leucine Rich Repeat family protein, expressed
LOC_Os04g55450Os.38395.3.S1_x_at11/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55450Os.38395.4.S1_x_at9/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55450Os.38395.2.S1_x_at9/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55450Os.38395.5.S1_at3/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55450Os.38395.1.S1_at1/114+32760827..32767456transposon protein, putative, Mutator sub-class
LOC_Os04g55480Os.49456.1.S1_at10/114+32775229..32780712Zn-finger in ubiquitin-hydrolases and other protein, expressed
LOC_Os04g55490Os.55538.1.S1_at11/114+32782815..32783933expressed protein
LOC_Os04g55500Os.5453.1.S1_at11/114+32787254..32793839expressed protein
LOC_Os04g55510Os.25780.1.S1_s_at11/114+32803766..32809289Zinc finger, C3HC4 type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49456.1.S1_at--113--951Chr04:32776675..32776699 (25 bp)
AGGAACAACACATTTCTGATGCAGT
LOC_Os04g55480
Os.49456.1.S1_at--308--5431Chr04:32776457..32776481 (25 bp)
GAACCAGGATATATGGCGTCGAACA
LOC_Os04g55480
Os.49456.1.S1_at--275--3291Chr04:32775894..32775918 (25 bp)
CAAAGGAGGTTTGCTGGTGCCACTC
LOC_Os04g55480
Os.49456.1.S1_at--13--2011Chr04:32775873..32775897 (25 bp)
ACTCCCAATGGTGCCAGATTCTGGA
LOC_Os04g55480
Os.49456.1.S1_at--446--991Chr04:32775815..32775839 (25 bp)
AGGAGGAACCAGTAGCTGCATCTGT
LOC_Os04g55480
Os.49456.1.S1_at--394--6971Chr04:32775804..32775828 (25 bp)
GTAGCTGCATCTGTTGTACATGTAA
LOC_Os04g55480
Os.49456.1.S1_at--716--2731Chr04:32775778..32775802 (25 bp)
AAGCAATTGCTTGGCTAATCTGTGC
LOC_Os04g55480
Os.49456.1.S1_at--953--4831Chr04:32775765..32775789 (25 bp)
GCTAATCTGTGCCAACCAGGATAAT
LOC_Os04g55480
Os.49456.1.S1_at--1032--6011Chr04:32775718..32775742 (25 bp)
GAGAGTGCAATATTATTCTACTACA
LOC_Os04g55480
Os.49456.1.S1_at--106--2151Chr04:32775696..32775720 (25 bp)
ACAGATAGCTGCCTTTTATGGAACA
LOC_Os04g55480
Os.49456.1.S1_at--380--3171NONE
CAATTTTACATTACATACAGGGCTA
NONE
Target Sequence 
AGGAACAACACATTTCTGATGCAGTGGATAAAGCTGTAAATGATAAGAGTAAAGAAATCCAACAAAAGATTGAGANTGCA
ATGTTGGAGAAAAAGAAACTTGCAGATATGAATGAAAAACTCACGAAGAACCAGGATATATGGCGTCGAACACTAAAAGA
AATTGAGGAAAGGGAGAGGGCTCAACTGAAGTTGAAAGATGATACAATTCGTGATCTAGAAGAACAGATAAAAGATTTCA
AATTTTCCATCAAGTTACAGAAATCGATCGAGAAGAATAAAAATGCTGATGATCTCAAAGGAGGTTTGCTGGTGCCACTC
CCAATGGTGCCAGATTCTGGAACCAAAGGTAAAAGATCGTCAAGAACAAGCAAGAGGAGGAACCAGTAGCTGCATCTGTT
GTACATGTAACAAGCAATTGCTTGGCTAATCTGTGCCAACCAGGATAATATGATACATTCTGAAAAAAAGAGAGAGTGCA
ATATTATTCTACTACAGATAGCTGCCTTTTATGGAACAGAAAATTGAACCAAAGGATAGCATAGTTTACAATTTTACATT
ACATACAGGGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49456.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis