Browse Element(s) Details


Os.49457.1.A1_at

Description gb:AK064289.1
DB_XREF= gi:32974307
TID=Os.49457.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49457 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-105-H04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-105-H04, full insert sequence.
FL= gb:AK064289.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4595011/11Amino acid permease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g45910Os.8071.1.S1_at11/114+26971925..26975724Placental protein 11 precursor, putative, expressed
LOC_Os04g45920Os.46958.1.S1_at5/114+26975315..26977790Protein kinase domain containing protein, expressed
LOC_Os04g45930Os.5872.1.S2_at11/114+26981176..26986468RNA recognition motif, putative, expressed
LOC_Os04g45930Os.5872.1.S1_at11/114+26981176..26986468RNA recognition motif, putative, expressed
LOC_Os04g45940OsAffx.4103.1.S1_s_at11/114+26991087..26992140expressed protein
LOC_Os04g45950Os.49457.1.A1_at11/114+26995029..26999754Amino acid permease family protein, expressed
LOC_Os04g45960Os.18533.1.S1_at11/114+27003529..27007237serine proteinase, putative, expressed
LOC_Os04g45970Os.52150.1.S1_at11/114+27014274..27017490Glutamate dehydrogenase, putative, expressed
LOC_Os04g45970Os.52150.1.S1_x_at11/114+27014274..27017490Glutamate dehydrogenase, putative, expressed
LOC_Os04g45980NANA4+27022063..27022636expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0015802biological_processbasic amino acid transport
GO:0016020cellular_componentmembrane
GO:0015171molecular_functionamino acid transporter activity
GO:0015326molecular_functioncationic amino acid transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49457.1.A1_at--391--991Chr04:26995576..26995600 (25 bp)
AGGAGGATCCATGGGCAATGCCGAT
LOC_Os04g45950
Os.49457.1.A1_at--1155--6991Chr04:26995492..26995516 (25 bp)
GTACGGCGAGACATGCCAGAGCCAC
LOC_Os04g45950
Os.49457.1.A1_at--745--1331Chr04:26995463..26995487 (25 bp)
AGAGTGGATGGTCCCTCTGATGCCA
LOC_Os04g45950
Os.49457.1.A1_at--979--9051Chr04:26995427..26995451 (25 bp)
TGCATCCGTCTTCCTGAATGTGTTC
LOC_Os04g45950
Os.49457.1.A1_at--138--5291Chr04:26995412..26995436 (25 bp)
GAATGTGTTCCTGATGACCACTCTC
LOC_Os04g45950
Os.49457.1.A1_at--712--4291Chr04:26995361..26995385 (25 bp)
CCTCTGGAGCTTTGTGATCATAGTC
LOC_Os04g45950
Os.49457.1.A1_at--529--9031Chr04:26995317..26995341 (25 bp)
TGCACTCCACATACTCTGCAGAAGA
LOC_Os04g45950
Os.49457.1.A1_at--798--6211Chr04:26995288..26995312 (25 bp)
GAGGCTGTCAATGCTATGATTCATC
LOC_Os04g45950
Os.49457.1.A1_at--779--10011Chr04:26995192..26995216 (25 bp)
TAGCTTGGCAATTAGGCTGTCTCCA
LOC_Os04g45950
Os.49457.1.A1_at--409--4771Chr04:26995126..26995150 (25 bp)
GCTGCTTTTGCATTAGGTTAGACTC
LOC_Os04g45950
Os.49457.1.A1_at--747--3671Chr04:26995099..26995123 (25 bp)
CTTTTCCTGCTTTTGTGCTTGCAAA
LOC_Os04g45950
Target Sequence 
AGGAGGATCCATGGGCAATGCCGATGGGGAATGGCTTTGTTCGGCGCCACCTCCGTGACGATTACCGCCATGTTCCACTG
CGCGGTACGGCGAGACATGCCAGAGCCACCATCAGAGTGGATGGTCCCTCTGATGCCATGGCCGGCGGCTGCATCCGTCT
TCCTGAATGTGTTCCTGATGACCACTCTCAAGGTGATGTCATTTCAGAGGTTTGGCCTCTGGAGCTTTGTGATCATAGTC
TTCTATGTCTGCTATGGGGTGCACTCCACATACTCTGCAGAAGAAATTGAGGCTGTCAATGCTATGATTCATCATGCCAA
TATGGACATATCTTAGCAATAGCAGCACATAATACATTGATCTAGGAGTTACTTTGGAGCTAACTAGCTTGGCAATTAGG
CTGTCTCCAGAACGGTCCCGAATCTAAAGAGGATGGAGGGCAAAAGAGAAGCTGCTTTTGCATTAGGTTAGACTCTTCTT
TTCCTGCTTTTGTGCTTGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49457.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis