Browse Element(s) Details


Os.49487.1.S1_at

Description gb:AK105953.1
DB_XREF= gi:32991162
TID=Os.49487.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49487 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-205-D04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-205-D04, full insert sequence.
FL= gb:AK072049.1 gb:AK105953.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g0160011/11D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os01g121501/11hypothetical protein
LOC_Os04g462701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01550OsAffx.13611.1.S1_at11/114+365948..366956Peroxidase family protein
LOC_Os04g01550OsAffx.13611.1.S1_x_at11/114+365948..366956Peroxidase family protein
LOC_Os04g01560OsAffx.25822.1.S1_at11/114+372485..374831expressed protein
LOC_Os04g01570Os.28801.1.S1_at10/114+376759..377523pectinesterase inhibitor domain containing protein, expressed
LOC_Os04g01580OsAffx.3695.1.S1_x_at11/114+381388..381840hypothetical protein
LOC_Os04g01590Os.25208.1.S1_at11/114+387039..391434Arginase, putative, expressed
LOC_Os04g01600Os.49487.2.S1_at11/114+391497..395875D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01600Os.49487.1.S1_a_at11/114+391497..395875D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01600Os.49487.1.S1_at11/114+391497..395875D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain containing protein, expressed
LOC_Os04g01610NANA4+401207..402922expressed protein
LOC_Os04g01620NANA4+409272..415306retrotransposon protein, putative, unclassified
LOC_Os04g01630NANA4+416053..419343retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006564biological_processL-serine biosynthesis
GO:0009507cellular_componentchloroplast
GO:0004617molecular_functionphosphoglycerate dehydrogenase activity
GO:0016491molecular_functionoxidoreductase activity
GO:0016616molecular_functionoxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49487.1.S1_at--57--311Chr04:395495..395720 (25 bp)
ATACTCCACGTACAGAAGTGAACTC
LOC_Os04g01600
Os.49487.1.S1_at--881--5311Chr04:395710..395734 (25 bp)
GAAGTGAACTCCGATAATACTCCAG
LOC_Os04g01600
Os.49487.1.S1_at--1154--7351Chr04:395713..395737 (25 bp)
GTGAACTCCGATAATACTCCAGTAT
LOC_Os04g01600
Os.49487.1.S1_at--380--751Chr04:395758..395782 (25 bp)
ATGTACAGTGTAACCCAAATAAGCG
LOC_Os04g01600
Os.49487.1.S1_at--555--2251Chr04:395774..395798 (25 bp)
AAATAAGCGGCCCATCAGAGGTCCA
LOC_Os04g01600
Os.49487.1.S1_at--391--2671Chr04:395778..395802 (25 bp)
AAGCGGCCCATCAGAGGTCCATTGG
LOC_Os04g01600
Os.49487.1.S1_at--293--4331Chr04:395785..395809 (25 bp)
CCATCAGAGGTCCATTGGCCCAAAA
LOC_Os04g01600
Os.49487.1.S1_at--367--7771Chr04:395793..395817 (25 bp)
GGTCCATTGGCCCAAAAGAGGCTTT
LOC_Os04g01600
Os.49487.1.S1_at--1028--2411Chr04:395806..395830 (25 bp)
AAAAGAGGCTTTATACTGTACTGGA
LOC_Os04g01600
Os.49487.1.S1_at--264--1971Chr04:395820..395844 (25 bp)
ACTGTACTGGAATAAGTTCATCCGA
LOC_Os04g01600
Os.49487.1.S1_at--1043--19335Chr12:3973997..3974018 (22 bp)
ACTGGAATAAGTTCATCCGAGGTCC
NONE
Target Sequence 
ATACTCCACGTACAGAAGTGAACTCCGATAATACTCCAGTATATACAGTGATGGGTATATATATGTACAGTGTAACCCAA
ATAAGCGGCCCATCAGAGGTCCATTGGCCCAAAAGAGGCTTTATACTGTACTGGAATAAGTTCATCCGAGGTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49487.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis