Browse Element(s) Details


Os.49499.1.S1_at

Description gb:AF358774.1
DB_XREF= gi:19070774
TID=Os.49499.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.49499 (NCBI UniGene Cluster)
UG_TITLE=Clone Osl282 putative NADH subunit 2 protein mRNA, partial cds
DEF=Oryza sativa clone Osl282 putative NADH subunit 2 protein mRNA, partial cds.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g407909/11expressed protein
LOC_Os02g032202/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40780Os.4089.1.S1_at11/1110+21554731..21573899transcriptional regulator, putative, expressed
LOC_Os10g40780Os.56157.1.A1_at1/1110+21554731..21573899transcriptional regulator, putative, expressed
LOC_Os10g40790Os.46319.1.S1_s_at10/1110+21577938..21585323expressed protein
LOC_Os10g40790Os.49499.1.S1_at9/1110+21577938..21585323expressed protein
LOC_Os10g40790Os.17829.1.S1_at9/1110+21577938..21585323expressed protein
LOC_Os10g40790OsAffx.30371.1.S1_at6/1110+21577938..21585323expressed protein
LOC_Os10g40790OsAffx.12663.1.S1_at3/1110+21577938..21585323expressed protein
LOC_Os10g40790OsAffx.4491.1.S1_at1/1110+21577938..21585323expressed protein
LOC_Os10g40790Os.26733.2.S1_x_at1/1110+21577938..21585323expressed protein
LOC_Os10g40790Os.52575.1.S1_x_at1/1110+21577938..21585323expressed protein
LOC_Os10g40800OsAffx.7916.1.S1_at11/1110+21587702..21591963retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g40802NANA10+21601568..21602690NA
LOC_Os10g40804Os.2741.4.S1_x_at10/1110+21604687..21607349retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g40806NANA10+21609129..21610643hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49499.1.S1_at--738--1192Chr10:21579483..21579507 (25 bp)
AGTATTGGAATTGCGTAAGGCTTTC
LOC_Os10g40790
Os.49499.1.S1_at--92--9772Chr10:21579498..21579522 (25 bp)
TAAGGCTTTCTTTACAGTCGTGTGA
LOC_Os10g40790
Os.49499.1.S1_at--927--6571NONE
GATTCGTCACGTTTGTTGCTTGCTG
NONE
Os.49499.1.S1_at--23--8671NONE
TGTGGCCATACAAAGATATCCGTCT
NONE
Os.49499.1.S1_at--280--251Chr10:21579559..21579583 (25 bp)
ATATCCGTCTTGTGTTCTGATAGAT
LOC_Os10g40790
Os.49499.1.S1_at--1049--10531Chr10:21579641..21579665 (25 bp)
TTCAGGGCCAATGGGAGTGAATCAT
LOC_Os10g40790
Os.49499.1.S1_at--139--9032Chr10:21579736..21579760 (25 bp)
TGCACCGCGGAGTGTATTTTCACAT
LOC_Os10g40790
Os.49499.1.S1_at--730--4712Chr10:21579788..21579812 (25 bp)
GCTGGACATATACCCCTACAGTAAT
LOC_Os10g40790
Os.49499.1.S1_at--28--2351Chr10:21579903..21579927 (25 bp)
AAAGAATGCTGTTATGTCCATATTG
LOC_Os10g40790
Os.49499.1.S1_at--737--5193Chr10:21579942..21579966 (25 bp)
GCAATTTACTTGCTGCTATAGCAGA
LOC_Os10g40790
Os.49499.1.S1_at--349--3013Chr10:21579972..21579996 (25 bp)
AATGCTTTAGGCTTTTCCATGCTGC
LOC_Os10g40790
Target Sequence 
AGTATTGGAATTGCGTAAGGCTTTCTTTACAGTCGTGTGATTCGTCACGTTTGTTGCTTGCTGTGGCCATACAAAGATAT
CCGTCTTGTGTTCTGATAGATGTATTGACATCAATATTGTTATGTTATCAATTCAGCAAGGATGTAAATGGAAAAGGTTT
CAGGGCCAATGGGAGTGAATCATCGAATAGACAGCCAAAGGACAAAGGATTCTCATGAAAAACAAGGATTTCAGCTTACA
AGAGGTGCTTGAATGCACCGCGGAGTGTATTTTCACATTTTGTTGGAGAAATAATTGAGGCAATGGCTGGACATATACCC
CTACAGTAATCATGGGAAAGCTATTATCTGACAACGGGAGTCAAGAGTTCGGTGATTTTAAGCTCGTTATACATAGAATG
CTGTCTGTATCTTTATGAAAAAAGAATGCTGTTATGTCCATATTGATTTTATCCCATATGCAATTTACTTGCTGCTATAG
CAGATCAGCAATGCTTTAGGCTTTTCCATGCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49499.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis