Browse Element(s) Details


Os.49500.1.S1_at

Description gb:AF403127.1
DB_XREF= gi:22086622
GEN=RLK13
TID=Os.49500.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.49500 (NCBI UniGene Cluster)
DEF=Oryza sativa S-locus receptor-like kinase RLK13 (RLK13) mRNA, complete cds.
PROD=S-locus receptor-like kinase RLK13
FL= gb:AK065352.1 gb:AF403127.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5399811/11D-mannose binding lectin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g53970OsAffx.26593.1.S1_at10/114+31933786..31936082hypothetical protein
LOC_Os04g53980Os.20602.2.S1_x_at11/114+31944431..31946611hAT family dimerisation domain containing protein
LOC_Os04g53990Os.25006.1.A1_at11/114+31947661..31950512expressed protein
LOC_Os04g53994Os.57529.1.S1_at11/114+31954508..31958289D-mannose binding lectin family protein, expressed
LOC_Os04g53998Os.49500.1.S1_at11/114+31959768..31963106D-mannose binding lectin family protein, expressed
LOC_Os04g54002Os.20532.1.S1_at10/114+31970352..31974125D-mannose binding lectin family protein, expressed
LOC_Os04g54010Os.20531.1.S1_at10/114+31974718..31977883Protein kinase domain containing protein, expressed
LOC_Os04g54010OsAffx.30180.4.S1_x_at1/114+31974718..31977883Protein kinase domain containing protein, expressed
LOC_Os04g54020Os.20531.1.S1_at5/114+31978528..31983657receptor-like kinase, putative
LOC_Os04g54020OsAffx.14405.1.S1_at1/114+31978528..31983657receptor-like kinase, putative
LOC_Os04g54020OsAffx.30180.4.S1_x_at1/114+31978528..31983657receptor-like kinase, putative
LOC_Os04g54030OsAffx.26594.1.S1_at11/114+31986455..31986739hypothetical protein
LOC_Os04g54040NANA4+31987597..31988546hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49500.1.S1_at--1089--10851Chr04:31960362..31960386 (25 bp)
TTGGAAGGCTCCTTTTCTGTCAAGT
LOC_Os04g53998
Os.49500.1.S1_at--599--7771Chr04:31960318..31960342 (25 bp)
GGTGCTACTGTTGGAGCTTGTAAGT
LOC_Os04g53998
Os.49500.1.S1_at--1002--8711Chr04:31960260..31960280 (21 bp)
TCCAAAATCTTATAACCTTCGCGTG
LOC_Os04g53998
Os.49500.1.S1_at--565--9791Chr04:31960158..31960268 (25 bp)
TAACCTTCGCGTGGAGTTTATGGAA
LOC_Os04g53998
Os.49500.1.S1_at--658--7731Chr04:31960112..31960136 (25 bp)
GGTGGACTCATCAATTCGGGAGAGT
LOC_Os04g53998
Os.49500.1.S1_at--807--7631Chr04:31960095..31960119 (25 bp)
GGGAGAGTTGTCTACTTCACGAAGT
LOC_Os04g53998
Os.49500.1.S1_at--240--7431Chr04:31960041..31960065 (25 bp)
GTGTTCAAGATGACCCAACTGCCAG
LOC_Os04g53998
Os.49500.1.S1_at--726--5971Chr04:31959985..31960009 (25 bp)
GAGAACGAGACAGCTGCTCTTCCTA
LOC_Os04g53998
Os.49500.1.S1_at--762--6891Chr04:31959873..31959897 (25 bp)
GTATCACAGCACTAGAGGGACGTTA
LOC_Os04g53998
Os.49500.1.S1_at--867--9851Chr04:31959839..31959863 (25 bp)
TACACCATTCCCTGTTTAGTCTATA
LOC_Os04g53998
Os.49500.1.S1_at--699--2051Chr04:31959813..31959837 (25 bp)
ACTTCTGTAGCTTGTAGTTGTACAC
LOC_Os04g53998
Target Sequence 
TTGGAAGGCTCCTTTTCTGTCAAGTCTGACACCTACAGTTTTGGGGTGCTACTGTTGGAGCTTGTAAGTGGCTTAAAGAT
CAGTTCGCCCCATCTCATAATGGATTTCCAAAATCTTATAACCTTCGCGTGGAGTTTATGGAAAGATGGAAATGCAATGG
ATTTGGTGGACTCATCAATTCGGGAGAGTTGTCTACTTCACGAAGTTTTACGATGTATTCAAATAGCACTTTCATGTGTT
CAAGATGACCCAACTGCCAGGCCACTCATGTCATCCATTGTGTTCATGTTAGAGAACGAGACAGCTGCTCTTCCTACCCC
AAAGGAGNCTGCTTATTTGACAGCTANGGTCTATGGAACTAAAGACACTAGAGAAAACAAGGAAAGATCTGTAAATAACG
TGAGTATCACAGCACTAGAGGGACGTTAAATGTTTATTACACCATTCCCTGTTTAGTCTATAAACTTCTGTAGCTTGTAG
TTGTACAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49500.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis