Browse Element(s) Details


Os.49518.1.S1_at

Description gb:AK099434.1
DB_XREF= gi:32984643
TID=Os.49518.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49518 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013014L03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013014L03, full insert sequence.
FL= gb:AK099434.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2302011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g22960OsAffx.25199.1.S1_at11/113+13242011..13243186expressed protein
LOC_Os03g22970Os.2987.3.S1_x_at3/113+13244334..13248447transposon protein, putative, unclassified
LOC_Os03g22980NANA3+13249024..13250446retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g22990Os.57404.1.S1_at11/113+13251612..13254083F-box domain containing protein, expressed
LOC_Os03g23000Os.56029.1.S1_at1/113+13255009..13255245hypothetical protein
LOC_Os03g23010Os.12197.1.S1_x_at11/113+13262025..13263348expressed protein
LOC_Os03g23010Os.12197.2.S1_a_at11/113+13262025..13263348expressed protein
LOC_Os03g23020Os.49518.1.S1_at11/113+13268172..13270294expressed protein
LOC_Os03g23030OsAffx.12996.1.S1_at10/113+13272788..13288554aberrant pollen transmission 1, putative, expressed
LOC_Os03g23030Os.52128.1.S1_at2/113+13272788..13288554aberrant pollen transmission 1, putative, expressed
LOC_Os03g23040OsAffx.12997.1.S1_x_at10/113+13290065..13291728hypothetical protein
LOC_Os03g23040OsAffx.12997.1.S1_at10/113+13290065..13291728hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49518.1.S1_at--905--891Chr03:13268621..13268645 (25 bp)
AGGCGCAGAAGATTTTGCAGGAGAA
LOC_Os03g23020
Os.49518.1.S1_at--930--2231Chr03:13269677..13269701 (25 bp)
AAATTGCGCTGTATGGAAGAGTCCT
LOC_Os03g23020
Os.49518.1.S1_at--211--2791Chr03:13269693..13269717 (25 bp)
AAGAGTCCTGTCATCAGATAATGCT
LOC_Os03g23020
Os.49518.1.S1_at--197--6291Chr03:13269760..13269885 (25 bp)
GATGATTTGCCTGAACCTGAAGTAA
LOC_Os03g23020
Os.49518.1.S1_at--644--2391Chr03:13269886..13269910 (25 bp)
AAACATACGAAGATGGTGGGACTAA
LOC_Os03g23020
Os.49518.1.S1_at--1129--8471Chr03:13269902..13269926 (25 bp)
TGGGACTAAAATTACGGTCACCACG
LOC_Os03g23020
Os.49518.1.S1_at--594--131Chr03:13269912..13269936 (25 bp)
ATTACGGTCACCACGAGCGAAATCA
LOC_Os03g23020
Os.49518.1.S1_at--388--5591Chr03:13269930..13269954 (25 bp)
GAAATCACTCCTGAAGATGACGATG
LOC_Os03g23020
Os.49518.1.S1_at--175--5431Chr03:13270046..13270070 (25 bp)
GAAGCCATCGAAGAGAACCTTCAGG
LOC_Os03g23020
Os.49518.1.S1_at--973--10351Chr03:13270219..13270243 (25 bp)
TTTTTGCCAGACACGATGAACTTTG
LOC_Os03g23020
Os.49518.1.S1_at--301--9611Chr03:13270262..13270286 (25 bp)
TCATCCAAATGAGGCTAATCATGCT
LOC_Os03g23020
Target Sequence 
AGGCGCAGAAGATTTTGCAGGAGAAGGAGAGAAAGAAGCGAATCGAGGAGCGCAAGCGGAGAAAGCAAGAGAAAGAAATT
GCGCTGTATGGAAGAGTCCTGTCATCAGATAATGCTGATGGTGAAGATGTTGAGAATGATGGTGATGAAATGGAAACTGA
TGATTTGCCTGAACCTGAAGTAAAAACATACGAAGATGGTGGGACTAAAATTACGGTCACCACGAGCGAAATCACTCCTG
AAGATGACGATGAAGACCTTGGCCCGAAAAGGNTCACCCCTGCNTCGACGGGCTACGCCAACAAGAGCGTCTCCAAGAAG
AGTGCTAGTNTAGGTGTAAAGAAGAAGCCATCGAAGAGAACCTTCAGGAATAAGAGTAANTCTAAGAAGGGCGACCAGAA
GCNAGGTGCTGCAAAGGNTAAACGGAAGANCAAAGGGAGGAAGTGAGTGANTGTTTNCTNTANCCACTCTGTAGAAATNT
TTGCACCTTTGGCCAGGGCCAGAGGCNAGAGCTGCCGTTTTTGCCAGACACGATGAACTTTGTACTCGGTTCCTGATTCA
TCATCCAAATGAGGCTAATCATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49518.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis