Browse Element(s) Details


Os.49521.1.S1_at

Description gb:AK064785.1
DB_XREF= gi:32974803
TID=Os.49521.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49521 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023139P09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013000B16, full insert sequence.
FL= gb:AK064785.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3604011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35990OsAffx.14167.1.S1_at9/114+21754818..21759223F-box domain containing protein
LOC_Os04g35990OsAffx.26351.1.S1_at1/114+21754818..21759223F-box domain containing protein
LOC_Os04g36000OsAffx.26351.1.S1_at10/114+21761415..21764449F-box domain containing protein
LOC_Os04g36010OsAffx.26352.1.S1_at11/114+21769611..21773722hypothetical protein
LOC_Os04g36020OsAffx.14168.1.S1_at11/114+21777251..21778510F-box domain containing protein
LOC_Os04g36030OsAffx.14169.1.S1_at11/114+21778951..21782471AIG1 family protein
LOC_Os04g36030Os.52782.1.S1_at1/114+21778951..21782471AIG1 family protein
LOC_Os04g36040Os.49521.1.S1_at11/114+21783468..21788376POT family protein, expressed
LOC_Os04g36040Os.22928.1.S1_x_at1/114+21783468..21788376POT family protein, expressed
LOC_Os04g36050Os.18612.1.S1_s_at11/114+21802137..21807705transmembrane CLPTM1 family protein, putative, expressed
LOC_Os04g36050Os.18612.1.S1_x_at11/114+21802137..21807705transmembrane CLPTM1 family protein, putative, expressed
LOC_Os04g36050Os.18612.2.S1_at10/114+21802137..21807705transmembrane CLPTM1 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015706biological_processnitrate transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0005509molecular_functioncalcium ion binding
GO:0015112molecular_functionnitrate transporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49521.1.S1_at--873--10571Chr04:21783884..21783908 (25 bp)
TTCTACCTCAGCTCGGTGCTCGTGT
LOC_Os04g36040
Os.49521.1.S1_at--273--3791Chr04:21783866..21783890 (25 bp)
CTCGTGTCGCTCGTGAACCGTGTCA
LOC_Os04g36040
Os.49521.1.S1_at--833--7311Chr04:21783749..21783773 (25 bp)
GTGCTCAGCGTGATCAACTTCTTCT
LOC_Os04g36040
Os.49521.1.S1_at--1129--8831Chr04:21783739..21783763 (25 bp)
TGATCAACTTCTTCTGCTACCTGCT
LOC_Os04g36040
Os.49521.1.S1_at--501--4851Chr04:21783724..21783748 (25 bp)
GCTACCTGCTCTGCGCGAGGTGGTA
LOC_Os04g36040
Os.49521.1.S1_at--1079--9471Chr04:21783715..21783739 (25 bp)
TCTGCGCGAGGTGGTACAACTCCGG
LOC_Os04g36040
Os.49521.1.S1_at--932--2571Chr04:21783629..21783653 (25 bp)
AACGGCAAGGAGATCATCTGAAGAA
LOC_Os04g36040
Os.49521.1.S1_at--973--5211Chr04:21783593..21783617 (25 bp)
GAATTATAATTCTATGCGACTGAAA
LOC_Os04g36040
Os.49521.1.S1_at--821--4591Chr04:21783578..21783602 (25 bp)
GCGACTGAAAACTGTATATGCGTAT
LOC_Os04g36040
Os.49521.1.S1_at--899--4631Chr04:21783559..21783583 (25 bp)
GCGTATAGCTGTAATGTATGTATGT
LOC_Os04g36040
Os.49521.1.S1_at--377--10111Chr04:21783503..21783527 (25 bp)
TATGTATACATGCACGAGGAATAGT
LOC_Os04g36040
Target Sequence 
TTCTACCTCAGCTCGGTGCTCGTGTCGCTCGTGAACCGTGTCACGGCGAGCCGCGGCGGCGGCGGCCATGGCGGGTGGCT
CGGCGACAACGACCTGGACAAGGACAGGCTGGACCTCTTCTACTGGATGCTCGCCGTGCTCAGCGTGATCAACTTCTTCT
GCTACCTGCTCTGCGCGAGGTGGTACAACTCCGGCGGCGCCGACGACGGCTGCGACGCCTCCGCCTCCGCTCAGGTCGCC
GCCGAAGGCGACGGCAACGGCAAGGAGATCATCTGAAGAAAAAAAAACATAGAATTATAATTCTATGCGACTGAAAACTG
TATATGCGTATAGCTGTAATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATACATGCACGAGG
AATAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49521.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis